miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 5' -55.7 NC_004065.1 + 33531 0.67 0.921207
Target:  5'- gUCAUCGAcacgUUCGGCGCgaUCUACaCGCu -3'
miRNA:   3'- uGGUAGCU----AAGCCGCGagAGGUG-GUG- -5'
16133 5' -55.7 NC_004065.1 + 82233 0.67 0.920661
Target:  5'- aACUcuUCGAUcagguugugcgugUCGGUGCgUUCCACCACc -3'
miRNA:   3'- -UGGu-AGCUA-------------AGCCGCGaGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 201020 0.68 0.90985
Target:  5'- gGCCG-CGugcgcgCGGCGcCUCgCCACCGCc -3'
miRNA:   3'- -UGGUaGCuaa---GCCGC-GAGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 37822 0.68 0.903833
Target:  5'- uGCCGUCGGagcUGcGCGCUCgCUACUACa -3'
miRNA:   3'- -UGGUAGCUaa-GC-CGCGAGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 115977 0.68 0.903833
Target:  5'- uCCAUCuGGgcgaagaGGCGCUCgUCCGCCGa -3'
miRNA:   3'- uGGUAG-CUaag----CCGCGAG-AGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 204427 0.68 0.897591
Target:  5'- cCCAUCGAgaUCGGCcuGCUgCUCaGCCGCc -3'
miRNA:   3'- uGGUAGCUa-AGCCG--CGA-GAGgUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 193856 0.68 0.897591
Target:  5'- uGCCGUCGcuucguccgCGGCGaCUC-CCGCCGa -3'
miRNA:   3'- -UGGUAGCuaa------GCCGC-GAGaGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 101856 0.68 0.891128
Target:  5'- -gCGUCGGg--GGCGCUaucgCCGCCGCa -3'
miRNA:   3'- ugGUAGCUaagCCGCGAga--GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 141597 0.68 0.891128
Target:  5'- cACCAacgCGAcggCGGCGggCUCCGCUGCc -3'
miRNA:   3'- -UGGUa--GCUaa-GCCGCgaGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 99903 0.68 0.884447
Target:  5'- cGCCGUUGAUgcugcCGGCGUcuUCUUCGuCCAUg -3'
miRNA:   3'- -UGGUAGCUAa----GCCGCG--AGAGGU-GGUG- -5'
16133 5' -55.7 NC_004065.1 + 163381 0.68 0.884447
Target:  5'- uCCAUCaGcgUCaGCGCg-UCCGCCACg -3'
miRNA:   3'- uGGUAG-CuaAGcCGCGagAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 171443 0.68 0.884447
Target:  5'- cGCCGUCG--UCGGCgaGCUCaUCCGCUg- -3'
miRNA:   3'- -UGGUAGCuaAGCCG--CGAG-AGGUGGug -5'
16133 5' -55.7 NC_004065.1 + 111367 0.68 0.884447
Target:  5'- uUCAUCG--UCGGCGCUC-CCGCUc- -3'
miRNA:   3'- uGGUAGCuaAGCCGCGAGaGGUGGug -5'
16133 5' -55.7 NC_004065.1 + 211943 0.68 0.884447
Target:  5'- gGCCA-CGAggcugCGGCGgUCgcugCCGCCAUc -3'
miRNA:   3'- -UGGUaGCUaa---GCCGCgAGa---GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 26016 0.69 0.870448
Target:  5'- gACCGUgGccUCGGCGUcgUCCACCAg -3'
miRNA:   3'- -UGGUAgCuaAGCCGCGagAGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 33635 0.69 0.870448
Target:  5'- gGCCAUCGcGUUCGGgGCgcgCUUCgACCGu -3'
miRNA:   3'- -UGGUAGC-UAAGCCgCGa--GAGG-UGGUg -5'
16133 5' -55.7 NC_004065.1 + 110576 0.69 0.870448
Target:  5'- cGCCAggcgUCGGUcUCGGCGa---CCACCACg -3'
miRNA:   3'- -UGGU----AGCUA-AGCCGCgagaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 110404 0.69 0.863139
Target:  5'- cGCCA-CGGccgaCGGCGuCUcCUCCGCCGCc -3'
miRNA:   3'- -UGGUaGCUaa--GCCGC-GA-GAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 171398 0.69 0.863139
Target:  5'- cAUCcgCGAgacCGGCGa-CUCCGCCGCg -3'
miRNA:   3'- -UGGuaGCUaa-GCCGCgaGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 52286 0.69 0.85563
Target:  5'- cCCAaaGAagggUCGGCGCacacUCUCCAUCGCu -3'
miRNA:   3'- uGGUagCUa---AGCCGCG----AGAGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.