miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 5' -55.7 NC_004065.1 + 1928 0.7 0.815312
Target:  5'- uCCAgucug-CGGCGUcgUCUCCACCGCg -3'
miRNA:   3'- uGGUagcuaaGCCGCG--AGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 2566 0.67 0.931149
Target:  5'- uACC-UCGAcgaccacUUCGGCaGCUaaaUCUGCCACa -3'
miRNA:   3'- -UGGuAGCU-------AAGCCG-CGAg--AGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 17794 0.66 0.949802
Target:  5'- gGCCGUCGcGUUUGGCGCga-UC-CCGCg -3'
miRNA:   3'- -UGGUAGC-UAAGCCGCGagaGGuGGUG- -5'
16133 5' -55.7 NC_004065.1 + 21965 0.66 0.957539
Target:  5'- gGCCGUCG--UCGGCaGgaCggugagggCCGCCACg -3'
miRNA:   3'- -UGGUAGCuaAGCCG-CgaGa-------GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 25703 0.66 0.957539
Target:  5'- uACCA------CGGCGCUCUCgACUACu -3'
miRNA:   3'- -UGGUagcuaaGCCGCGAGAGgUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 26016 0.69 0.870448
Target:  5'- gACCGUgGccUCGGCGUcgUCCACCAg -3'
miRNA:   3'- -UGGUAgCuaAGCCGCGagAGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 27521 0.71 0.789154
Target:  5'- uUCAUCG---CGGCGUgcCUCCACCACu -3'
miRNA:   3'- uGGUAGCuaaGCCGCGa-GAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 33531 0.67 0.921207
Target:  5'- gUCAUCGAcacgUUCGGCGCgaUCUACaCGCu -3'
miRNA:   3'- uGGUAGCU----AAGCCGCGagAGGUG-GUG- -5'
16133 5' -55.7 NC_004065.1 + 33635 0.69 0.870448
Target:  5'- gGCCAUCGcGUUCGGgGCgcgCUUCgACCGu -3'
miRNA:   3'- -UGGUAGC-UAAGCCgCGa--GAGG-UGGUg -5'
16133 5' -55.7 NC_004065.1 + 36252 0.66 0.957539
Target:  5'- uCCGcUCGGagCGGCGCUUUUCGCUggaGCa -3'
miRNA:   3'- uGGU-AGCUaaGCCGCGAGAGGUGG---UG- -5'
16133 5' -55.7 NC_004065.1 + 37492 0.66 0.964419
Target:  5'- gGCUGUgCGGaccccUGGCgGCUCUCCGCCAa -3'
miRNA:   3'- -UGGUA-GCUaa---GCCG-CGAGAGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 37822 0.68 0.903833
Target:  5'- uGCCGUCGGagcUGcGCGCUCgCUACUACa -3'
miRNA:   3'- -UGGUAGCUaa-GC-CGCGAGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 41339 0.7 0.831968
Target:  5'- gGCCAUCaGUUCGGCcugacgaccgucGuCUC-CCGCCGCg -3'
miRNA:   3'- -UGGUAGcUAAGCCG------------C-GAGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 43695 0.67 0.93165
Target:  5'- gACCGUUGcacaugggguAUUCcuuGCGCagcuUCUCCGCCACg -3'
miRNA:   3'- -UGGUAGC----------UAAGc--CGCG----AGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 43863 0.66 0.945602
Target:  5'- cGCCGUgGAgUUCGGUgGCggcCUCCACgGCc -3'
miRNA:   3'- -UGGUAgCU-AAGCCG-CGa--GAGGUGgUG- -5'
16133 5' -55.7 NC_004065.1 + 44534 0.66 0.95378
Target:  5'- uACCGgggaCGGUggCGGCGCUgcCUCCcgacCCGCa -3'
miRNA:   3'- -UGGUa---GCUAa-GCCGCGA--GAGGu---GGUG- -5'
16133 5' -55.7 NC_004065.1 + 52286 0.69 0.85563
Target:  5'- cCCAaaGAagggUCGGCGCacacUCUCCAUCGCu -3'
miRNA:   3'- uGGUagCUa---AGCCGCG----AGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 53545 0.66 0.957539
Target:  5'- cACCGUCc---CGGUGC-CUCCGCCu- -3'
miRNA:   3'- -UGGUAGcuaaGCCGCGaGAGGUGGug -5'
16133 5' -55.7 NC_004065.1 + 61112 0.67 0.926543
Target:  5'- uGCCGUUGA-UC-GUGCUCUCgGCCGa -3'
miRNA:   3'- -UGGUAGCUaAGcCGCGAGAGgUGGUg -5'
16133 5' -55.7 NC_004065.1 + 64116 0.66 0.949802
Target:  5'- cACCuUCGGgcCGGCGCagaaagggcuUCUCCucCCGCu -3'
miRNA:   3'- -UGGuAGCUaaGCCGCG----------AGAGGu-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.