miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 5' -55.7 NC_004065.1 + 71756 0.66 0.960739
Target:  5'- uACCgGUCGGUgaccgugUUGGCGUcgaUCgCCGCCACu -3'
miRNA:   3'- -UGG-UAGCUA-------AGCCGCG---AGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 76769 0.72 0.733412
Target:  5'- gUCAUCGuc-CGGCGCaUCgCCGCCGCg -3'
miRNA:   3'- uGGUAGCuaaGCCGCG-AGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 78884 0.67 0.926543
Target:  5'- cGCCGaCGAUcaucgCGGCGUUg-CCGCCGCc -3'
miRNA:   3'- -UGGUaGCUAa----GCCGCGAgaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 82233 0.67 0.920661
Target:  5'- aACUcuUCGAUcagguugugcgugUCGGUGCgUUCCACCACc -3'
miRNA:   3'- -UGGu-AGCUA-------------AGCCGCGaGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 83393 0.66 0.949802
Target:  5'- aGCCcgUGA--CGGCGUUCaCCACCGa -3'
miRNA:   3'- -UGGuaGCUaaGCCGCGAGaGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 85613 0.76 0.487981
Target:  5'- gAUCAUCGAgUCGGUGCUgUCgCGCUACa -3'
miRNA:   3'- -UGGUAGCUaAGCCGCGAgAG-GUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 99530 0.71 0.789154
Target:  5'- uCCGUCagcuggUCGGCGCUCccgUCuCGCCGCg -3'
miRNA:   3'- uGGUAGcua---AGCCGCGAG---AG-GUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 99903 0.68 0.884447
Target:  5'- cGCCGUUGAUgcugcCGGCGUcuUCUUCGuCCAUg -3'
miRNA:   3'- -UGGUAGCUAa----GCCGCG--AGAGGU-GGUG- -5'
16133 5' -55.7 NC_004065.1 + 101595 0.69 0.85563
Target:  5'- cGCCGcgcucagacUCGGUggCGGCGC-CgCCGCCGCu -3'
miRNA:   3'- -UGGU---------AGCUAa-GCCGCGaGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 101856 0.68 0.891128
Target:  5'- -gCGUCGGg--GGCGCUaucgCCGCCGCa -3'
miRNA:   3'- ugGUAGCUaagCCGCGAga--GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 110404 0.69 0.863139
Target:  5'- cGCCA-CGGccgaCGGCGuCUcCUCCGCCGCc -3'
miRNA:   3'- -UGGUaGCUaa--GCCGC-GA-GAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 110576 0.69 0.870448
Target:  5'- cGCCAggcgUCGGUcUCGGCGa---CCACCACg -3'
miRNA:   3'- -UGGU----AGCUA-AGCCGCgagaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 111367 0.68 0.884447
Target:  5'- uUCAUCG--UCGGCGCUC-CCGCUc- -3'
miRNA:   3'- uGGUAGCuaAGCCGCGAGaGGUGGug -5'
16133 5' -55.7 NC_004065.1 + 111696 0.67 0.93165
Target:  5'- cGCCAUgGAcgUCGGCGgUC-CCGCUg- -3'
miRNA:   3'- -UGGUAgCUa-AGCCGCgAGaGGUGGug -5'
16133 5' -55.7 NC_004065.1 + 111977 0.7 0.806742
Target:  5'- gGCCG-CGAUgaaGGCGCUCgagggggCCGCCuACg -3'
miRNA:   3'- -UGGUaGCUAag-CCGCGAGa------GGUGG-UG- -5'
16133 5' -55.7 NC_004065.1 + 115199 0.7 0.831968
Target:  5'- uGCCGgag--UCGGCGCUCccucUCUGCCGCg -3'
miRNA:   3'- -UGGUagcuaAGCCGCGAG----AGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 115977 0.68 0.903833
Target:  5'- uCCAUCuGGgcgaagaGGCGCUCgUCCGCCGa -3'
miRNA:   3'- uGGUAG-CUaag----CCGCGAG-AGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 117457 0.66 0.963769
Target:  5'- -gCGUCGuccggcuccgCGGcCGCUCgCCGCCACc -3'
miRNA:   3'- ugGUAGCuaa-------GCC-GCGAGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 118299 0.7 0.831968
Target:  5'- cAUCAUCGuccucaUCGGCGUUCUCguCGCCAg -3'
miRNA:   3'- -UGGUAGCua----AGCCGCGAGAG--GUGGUg -5'
16133 5' -55.7 NC_004065.1 + 119630 0.66 0.957539
Target:  5'- cGCCGUCGGccgUGGCGUguUCgaacggCCugCGCg -3'
miRNA:   3'- -UGGUAGCUaa-GCCGCG--AGa-----GGugGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.