miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 5' -55.7 NC_004065.1 + 119827 0.66 0.957539
Target:  5'- cCCucUCGAcgggcggCGGCGCgUCgcggCCGCCGCa -3'
miRNA:   3'- uGGu-AGCUaa-----GCCGCG-AGa---GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 123253 0.67 0.926543
Target:  5'- cACgAUCGAgUUGGUGCcCUCCACgCAg -3'
miRNA:   3'- -UGgUAGCUaAGCCGCGaGAGGUG-GUg -5'
16133 5' -55.7 NC_004065.1 + 126318 0.67 0.941178
Target:  5'- cGCCcgCca---GGCGCUCcCCGCCGCc -3'
miRNA:   3'- -UGGuaGcuaagCCGCGAGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 126617 0.75 0.535596
Target:  5'- uCCAUCGcgUCGGCcguGUUUUUCACCGCa -3'
miRNA:   3'- uGGUAGCuaAGCCG---CGAGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 127604 0.7 0.79802
Target:  5'- uACCGcugcUCGGgacCGGCGCUCUacgugCACCGCu -3'
miRNA:   3'- -UGGU----AGCUaa-GCCGCGAGAg----GUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 135305 0.66 0.949802
Target:  5'- cGCCGcCGAcUUCGGCccGCUCgagCCGCCc- -3'
miRNA:   3'- -UGGUaGCU-AAGCCG--CGAGa--GGUGGug -5'
16133 5' -55.7 NC_004065.1 + 136684 0.66 0.949802
Target:  5'- gGCCGgcggCGGgcCGGCucgaGCUUuuaUCCGCCACg -3'
miRNA:   3'- -UGGUa---GCUaaGCCG----CGAG---AGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 138221 0.66 0.949802
Target:  5'- gACCGcgcucugCGAUgucgaGGCGCUCgCCGCCGu -3'
miRNA:   3'- -UGGUa------GCUAag---CCGCGAGaGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 139354 1.08 0.005109
Target:  5'- gACCAUCGAUUCGGCGCUCUCCACCACc -3'
miRNA:   3'- -UGGUAGCUAAGCCGCGAGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 141597 0.68 0.891128
Target:  5'- cACCAacgCGAcggCGGCGggCUCCGCUGCc -3'
miRNA:   3'- -UGGUa--GCUaa-GCCGCgaGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 147161 0.7 0.840039
Target:  5'- gGCCAU-GAg-CGGCguGCUCUUCGCCACc -3'
miRNA:   3'- -UGGUAgCUaaGCCG--CGAGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 152819 0.71 0.789154
Target:  5'- gGCCAUCGccgugCGGgGCg--CCGCCGCg -3'
miRNA:   3'- -UGGUAGCuaa--GCCgCGagaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 152841 0.66 0.95378
Target:  5'- -aCGUCGAUcgaggUCGGCaGCcagagCCACCGCa -3'
miRNA:   3'- ugGUAGCUA-----AGCCG-CGaga--GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 152907 0.7 0.831968
Target:  5'- cCCGUcugaCGAUgucggCGGCGCUg-CCGCCGCg -3'
miRNA:   3'- uGGUA----GCUAa----GCCGCGAgaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 153630 0.66 0.961084
Target:  5'- cGCCAcUCGGacggCGGCgaGCUCaUCCGCgGCg -3'
miRNA:   3'- -UGGU-AGCUaa--GCCG--CGAG-AGGUGgUG- -5'
16133 5' -55.7 NC_004065.1 + 159903 0.72 0.723777
Target:  5'- uCUGUCGA-UCGGCGC-CgccgCCGCCGCu -3'
miRNA:   3'- uGGUAGCUaAGCCGCGaGa---GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 161425 0.75 0.564938
Target:  5'- uCCAggugCGAcgugUCGGCGCUCUggaucgccgCCGCCGCg -3'
miRNA:   3'- uGGUa---GCUa---AGCCGCGAGA---------GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 162280 0.67 0.936528
Target:  5'- cGCCGUCGGacgCGGCGCcgCUCgGCa-- -3'
miRNA:   3'- -UGGUAGCUaa-GCCGCGa-GAGgUGgug -5'
16133 5' -55.7 NC_004065.1 + 163272 0.66 0.961084
Target:  5'- gACCGUCucUUCGGuCGCgacgCCGCCGg -3'
miRNA:   3'- -UGGUAGcuAAGCC-GCGaga-GGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 163381 0.68 0.884447
Target:  5'- uCCAUCaGcgUCaGCGCg-UCCGCCACg -3'
miRNA:   3'- uGGUAG-CuaAGcCGCGagAGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.