miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 5' -55.7 NC_004065.1 + 229446 0.67 0.926543
Target:  5'- cACCA-CGGggUGGCGCUg-CCGCCAg -3'
miRNA:   3'- -UGGUaGCUaaGCCGCGAgaGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 211943 0.68 0.884447
Target:  5'- gGCCA-CGAggcugCGGCGgUCgcugCCGCCAUc -3'
miRNA:   3'- -UGGUaGCUaa---GCCGCgAGa---GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 210542 0.66 0.958983
Target:  5'- cCCAUCGcgacgaUgGGCGCUCcaccgacucccgucCCACCACg -3'
miRNA:   3'- uGGUAGCua----AgCCGCGAGa-------------GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 209046 0.71 0.752422
Target:  5'- cACCAUCGA--CGGgGUUCgCCGCUACu -3'
miRNA:   3'- -UGGUAGCUaaGCCgCGAGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 205165 0.71 0.75148
Target:  5'- cACCGUCGAggccgccgUCgccgccaacaucgGGCGCcgcgugcgUCUCCACCACc -3'
miRNA:   3'- -UGGUAGCUa-------AG-------------CCGCG--------AGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 204427 0.68 0.897591
Target:  5'- cCCAUCGAgaUCGGCcuGCUgCUCaGCCGCc -3'
miRNA:   3'- uGGUAGCUa-AGCCG--CGA-GAGgUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 202106 0.66 0.964419
Target:  5'- uCUGUCGg--CGGCGCUCgcguUCCugCAUc -3'
miRNA:   3'- uGGUAGCuaaGCCGCGAG----AGGugGUG- -5'
16133 5' -55.7 NC_004065.1 + 201020 0.68 0.90985
Target:  5'- gGCCG-CGugcgcgCGGCGcCUCgCCACCGCc -3'
miRNA:   3'- -UGGUaGCuaa---GCCGC-GAGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 200874 0.66 0.95378
Target:  5'- aACUAUCGAUUCaGgGCUCggCUGCC-Cg -3'
miRNA:   3'- -UGGUAGCUAAGcCgCGAGa-GGUGGuG- -5'
16133 5' -55.7 NC_004065.1 + 199930 0.66 0.949802
Target:  5'- uCCGUCccuGAcacaUCaGCGCgcgCUCCGCCACg -3'
miRNA:   3'- uGGUAG---CUa---AGcCGCGa--GAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 196655 0.72 0.714067
Target:  5'- gGCCAguagCGcg-CGGCGuCUCUCaCGCCACc -3'
miRNA:   3'- -UGGUa---GCuaaGCCGC-GAGAG-GUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 196057 0.66 0.949802
Target:  5'- aGCCAUCG--UCGGgGCccgugaUgUCCAUCGCg -3'
miRNA:   3'- -UGGUAGCuaAGCCgCG------AgAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 195772 0.66 0.949802
Target:  5'- gACCAUCGAaacgcaGGuCGCgUCUCUgggcGCCGCg -3'
miRNA:   3'- -UGGUAGCUaag---CC-GCG-AGAGG----UGGUG- -5'
16133 5' -55.7 NC_004065.1 + 194612 0.67 0.936528
Target:  5'- aGCCGUCGuccCGGUaCUCUcCCACgGCg -3'
miRNA:   3'- -UGGUAGCuaaGCCGcGAGA-GGUGgUG- -5'
16133 5' -55.7 NC_004065.1 + 193856 0.68 0.897591
Target:  5'- uGCCGUCGcuucguccgCGGCGaCUC-CCGCCGa -3'
miRNA:   3'- -UGGUAGCuaa------GCCGC-GAGaGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 187944 0.7 0.806742
Target:  5'- ----gUGuAUUCGGCGCUCUgUACCGCg -3'
miRNA:   3'- ugguaGC-UAAGCCGCGAGAgGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 185067 0.72 0.694454
Target:  5'- cGCUGUCGAaggUCGGUguGCUCUUCGCCGu -3'
miRNA:   3'- -UGGUAGCUa--AGCCG--CGAGAGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 181717 0.66 0.961084
Target:  5'- cAUCAUCGAUcccuUCGGCGCcaUCUUCGgaUACg -3'
miRNA:   3'- -UGGUAGCUA----AGCCGCG--AGAGGUg-GUG- -5'
16133 5' -55.7 NC_004065.1 + 176170 0.7 0.831968
Target:  5'- gGCCAUCc---CGGCGCga-CCGCCGCg -3'
miRNA:   3'- -UGGUAGcuaaGCCGCGagaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 174690 0.67 0.936528
Target:  5'- uCCGUCGggUCcGUGUccgUUUCCGCCGCu -3'
miRNA:   3'- uGGUAGCuaAGcCGCG---AGAGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.