miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 5' -55.7 NC_004065.1 + 115977 0.68 0.903833
Target:  5'- uCCAUCuGGgcgaagaGGCGCUCgUCCGCCGa -3'
miRNA:   3'- uGGUAG-CUaag----CCGCGAG-AGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 152907 0.7 0.831968
Target:  5'- cCCGUcugaCGAUgucggCGGCGCUg-CCGCCGCg -3'
miRNA:   3'- uGGUA----GCUAa----GCCGCGAgaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 147161 0.7 0.840039
Target:  5'- gGCCAU-GAg-CGGCguGCUCUUCGCCACc -3'
miRNA:   3'- -UGGUAgCUaaGCCG--CGAGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 52286 0.69 0.85563
Target:  5'- cCCAaaGAagggUCGGCGCacacUCUCCAUCGCu -3'
miRNA:   3'- uGGUagCUa---AGCCGCG----AGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 110404 0.69 0.863139
Target:  5'- cGCCA-CGGccgaCGGCGuCUcCUCCGCCGCc -3'
miRNA:   3'- -UGGUaGCUaa--GCCGC-GA-GAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 26016 0.69 0.870448
Target:  5'- gACCGUgGccUCGGCGUcgUCCACCAg -3'
miRNA:   3'- -UGGUAgCuaAGCCGCGagAGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 111367 0.68 0.884447
Target:  5'- uUCAUCG--UCGGCGCUC-CCGCUc- -3'
miRNA:   3'- uGGUAGCuaAGCCGCGAGaGGUGGug -5'
16133 5' -55.7 NC_004065.1 + 101856 0.68 0.891128
Target:  5'- -gCGUCGGg--GGCGCUaucgCCGCCGCa -3'
miRNA:   3'- ugGUAGCUaagCCGCGAga--GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 37822 0.68 0.903833
Target:  5'- uGCCGUCGGagcUGcGCGCUCgCUACUACa -3'
miRNA:   3'- -UGGUAGCUaa-GC-CGCGAGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 41339 0.7 0.831968
Target:  5'- gGCCAUCaGUUCGGCcugacgaccgucGuCUC-CCGCCGCg -3'
miRNA:   3'- -UGGUAGcUAAGCCG------------C-GAGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 118299 0.7 0.831968
Target:  5'- cAUCAUCGuccucaUCGGCGUUCUCguCGCCAg -3'
miRNA:   3'- -UGGUAGCua----AGCCGCGAGAG--GUGGUg -5'
16133 5' -55.7 NC_004065.1 + 1928 0.7 0.815312
Target:  5'- uCCAgucug-CGGCGUcgUCUCCACCGCg -3'
miRNA:   3'- uGGUagcuaaGCCGCG--AGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 126617 0.75 0.535596
Target:  5'- uCCAUCGcgUCGGCcguGUUUUUCACCGCa -3'
miRNA:   3'- uGGUAGCuaAGCCG---CGAGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 196655 0.72 0.714067
Target:  5'- gGCCAguagCGcg-CGGCGuCUCUCaCGCCACc -3'
miRNA:   3'- -UGGUa---GCuaaGCCGC-GAGAG-GUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 76769 0.72 0.733412
Target:  5'- gUCAUCGuc-CGGCGCaUCgCCGCCGCg -3'
miRNA:   3'- uGGUAGCuaaGCCGCG-AGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 27521 0.71 0.789154
Target:  5'- uUCAUCG---CGGCGUgcCUCCACCACu -3'
miRNA:   3'- uGGUAGCuaaGCCGCGa-GAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 99530 0.71 0.789154
Target:  5'- uCCGUCagcuggUCGGCGCUCccgUCuCGCCGCg -3'
miRNA:   3'- uGGUAGcua---AGCCGCGAG---AG-GUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 127604 0.7 0.79802
Target:  5'- uACCGcugcUCGGgacCGGCGCUCUacgugCACCGCu -3'
miRNA:   3'- -UGGU----AGCUaa-GCCGCGAGAg----GUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 111977 0.7 0.806742
Target:  5'- gGCCG-CGAUgaaGGCGCUCgagggggCCGCCuACg -3'
miRNA:   3'- -UGGUaGCUAag-CCGCGAGa------GGUGG-UG- -5'
16133 5' -55.7 NC_004065.1 + 187944 0.7 0.806742
Target:  5'- ----gUGuAUUCGGCGCUCUgUACCGCg -3'
miRNA:   3'- ugguaGC-UAAGCCGCGAGAgGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.