Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 115977 | 0.68 | 0.903833 |
Target: 5'- uCCAUCuGGgcgaagaGGCGCUCgUCCGCCGa -3' miRNA: 3'- uGGUAG-CUaag----CCGCGAG-AGGUGGUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 37822 | 0.68 | 0.903833 |
Target: 5'- uGCCGUCGGagcUGcGCGCUCgCUACUACa -3' miRNA: 3'- -UGGUAGCUaa-GC-CGCGAGaGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 187944 | 0.7 | 0.806742 |
Target: 5'- ----gUGuAUUCGGCGCUCUgUACCGCg -3' miRNA: 3'- ugguaGC-UAAGCCGCGAGAgGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 111977 | 0.7 | 0.806742 |
Target: 5'- gGCCG-CGAUgaaGGCGCUCgagggggCCGCCuACg -3' miRNA: 3'- -UGGUaGCUAag-CCGCGAGa------GGUGG-UG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 127604 | 0.7 | 0.79802 |
Target: 5'- uACCGcugcUCGGgacCGGCGCUCUacgugCACCGCu -3' miRNA: 3'- -UGGU----AGCUaa-GCCGCGAGAg----GUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 99530 | 0.71 | 0.789154 |
Target: 5'- uCCGUCagcuggUCGGCGCUCccgUCuCGCCGCg -3' miRNA: 3'- uGGUAGcua---AGCCGCGAG---AG-GUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 27521 | 0.71 | 0.789154 |
Target: 5'- uUCAUCG---CGGCGUgcCUCCACCACu -3' miRNA: 3'- uGGUAGCuaaGCCGCGa-GAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 76769 | 0.72 | 0.733412 |
Target: 5'- gUCAUCGuc-CGGCGCaUCgCCGCCGCg -3' miRNA: 3'- uGGUAGCuaaGCCGCG-AGaGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 196655 | 0.72 | 0.714067 |
Target: 5'- gGCCAguagCGcg-CGGCGuCUCUCaCGCCACc -3' miRNA: 3'- -UGGUa---GCuaaGCCGC-GAGAG-GUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 126617 | 0.75 | 0.535596 |
Target: 5'- uCCAUCGcgUCGGCcguGUUUUUCACCGCa -3' miRNA: 3'- uGGUAGCuaAGCCG---CGAGAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 1928 | 0.7 | 0.815312 |
Target: 5'- uCCAgucug-CGGCGUcgUCUCCACCGCg -3' miRNA: 3'- uGGUagcuaaGCCGCG--AGAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 118299 | 0.7 | 0.831968 |
Target: 5'- cAUCAUCGuccucaUCGGCGUUCUCguCGCCAg -3' miRNA: 3'- -UGGUAGCua----AGCCGCGAGAG--GUGGUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 101856 | 0.68 | 0.891128 |
Target: 5'- -gCGUCGGg--GGCGCUaucgCCGCCGCa -3' miRNA: 3'- ugGUAGCUaagCCGCGAga--GGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 111367 | 0.68 | 0.884447 |
Target: 5'- uUCAUCG--UCGGCGCUC-CCGCUc- -3' miRNA: 3'- uGGUAGCuaAGCCGCGAGaGGUGGug -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 26016 | 0.69 | 0.870448 |
Target: 5'- gACCGUgGccUCGGCGUcgUCCACCAg -3' miRNA: 3'- -UGGUAgCuaAGCCGCGagAGGUGGUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 110404 | 0.69 | 0.863139 |
Target: 5'- cGCCA-CGGccgaCGGCGuCUcCUCCGCCGCc -3' miRNA: 3'- -UGGUaGCUaa--GCCGC-GA-GAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 52286 | 0.69 | 0.85563 |
Target: 5'- cCCAaaGAagggUCGGCGCacacUCUCCAUCGCu -3' miRNA: 3'- uGGUagCUa---AGCCGCG----AGAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 147161 | 0.7 | 0.840039 |
Target: 5'- gGCCAU-GAg-CGGCguGCUCUUCGCCACc -3' miRNA: 3'- -UGGUAgCUaaGCCG--CGAGAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 152907 | 0.7 | 0.831968 |
Target: 5'- cCCGUcugaCGAUgucggCGGCGCUg-CCGCCGCg -3' miRNA: 3'- uGGUA----GCUAa----GCCGCGAgaGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 41339 | 0.7 | 0.831968 |
Target: 5'- gGCCAUCaGUUCGGCcugacgaccgucGuCUC-CCGCCGCg -3' miRNA: 3'- -UGGUAGcUAAGCCG------------C-GAGaGGUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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