Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 101856 | 0.68 | 0.891128 |
Target: 5'- -gCGUCGGg--GGCGCUaucgCCGCCGCa -3' miRNA: 3'- ugGUAGCUaagCCGCGAga--GGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 111367 | 0.68 | 0.884447 |
Target: 5'- uUCAUCG--UCGGCGCUC-CCGCUc- -3' miRNA: 3'- uGGUAGCuaAGCCGCGAGaGGUGGug -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 26016 | 0.69 | 0.870448 |
Target: 5'- gACCGUgGccUCGGCGUcgUCCACCAg -3' miRNA: 3'- -UGGUAgCuaAGCCGCGagAGGUGGUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 110404 | 0.69 | 0.863139 |
Target: 5'- cGCCA-CGGccgaCGGCGuCUcCUCCGCCGCc -3' miRNA: 3'- -UGGUaGCUaa--GCCGC-GA-GAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 52286 | 0.69 | 0.85563 |
Target: 5'- cCCAaaGAagggUCGGCGCacacUCUCCAUCGCu -3' miRNA: 3'- uGGUagCUa---AGCCGCG----AGAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 147161 | 0.7 | 0.840039 |
Target: 5'- gGCCAU-GAg-CGGCguGCUCUUCGCCACc -3' miRNA: 3'- -UGGUAgCUaaGCCG--CGAGAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 152907 | 0.7 | 0.831968 |
Target: 5'- cCCGUcugaCGAUgucggCGGCGCUg-CCGCCGCg -3' miRNA: 3'- uGGUA----GCUAa----GCCGCGAgaGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 115199 | 0.7 | 0.831968 |
Target: 5'- uGCCGgag--UCGGCGCUCccucUCUGCCGCg -3' miRNA: 3'- -UGGUagcuaAGCCGCGAG----AGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 176170 | 0.7 | 0.831968 |
Target: 5'- gGCCAUCc---CGGCGCga-CCGCCGCg -3' miRNA: 3'- -UGGUAGcuaaGCCGCGagaGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 101595 | 0.69 | 0.85563 |
Target: 5'- cGCCGcgcucagacUCGGUggCGGCGC-CgCCGCCGCu -3' miRNA: 3'- -UGGU---------AGCUAa-GCCGCGaGaGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 171398 | 0.69 | 0.863139 |
Target: 5'- cAUCcgCGAgacCGGCGa-CUCCGCCGCg -3' miRNA: 3'- -UGGuaGCUaa-GCCGCgaGAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 33635 | 0.69 | 0.870448 |
Target: 5'- gGCCAUCGcGUUCGGgGCgcgCUUCgACCGu -3' miRNA: 3'- -UGGUAGC-UAAGCCgCGa--GAGG-UGGUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 152819 | 0.71 | 0.789154 |
Target: 5'- gGCCAUCGccgugCGGgGCg--CCGCCGCg -3' miRNA: 3'- -UGGUAGCuaa--GCCgCGagaGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 209046 | 0.71 | 0.752422 |
Target: 5'- cACCAUCGA--CGGgGUUCgCCGCUACu -3' miRNA: 3'- -UGGUAGCUaaGCCgCGAGaGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 205165 | 0.71 | 0.75148 |
Target: 5'- cACCGUCGAggccgccgUCgccgccaacaucgGGCGCcgcgugcgUCUCCACCACc -3' miRNA: 3'- -UGGUAGCUa-------AG-------------CCGCG--------AGAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 159903 | 0.72 | 0.723777 |
Target: 5'- uCUGUCGA-UCGGCGC-CgccgCCGCCGCu -3' miRNA: 3'- uGGUAGCUaAGCCGCGaGa---GGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 168214 | 0.72 | 0.704289 |
Target: 5'- cGCCGUCGAgucCGuGCGCUgCUaCUGCCACg -3' miRNA: 3'- -UGGUAGCUaa-GC-CGCGA-GA-GGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 185067 | 0.72 | 0.694454 |
Target: 5'- cGCUGUCGAaggUCGGUguGCUCUUCGCCGu -3' miRNA: 3'- -UGGUAGCUa--AGCCG--CGAGAGGUGGUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 161425 | 0.75 | 0.564938 |
Target: 5'- uCCAggugCGAcgugUCGGCGCUCUggaucgccgCCGCCGCg -3' miRNA: 3'- uGGUa---GCUa---AGCCGCGAGA---------GGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 202106 | 0.66 | 0.964419 |
Target: 5'- uCUGUCGg--CGGCGCUCgcguUCCugCAUc -3' miRNA: 3'- uGGUAGCuaaGCCGCGAG----AGGugGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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