miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 5' -55.7 NC_004065.1 + 85613 0.76 0.487981
Target:  5'- gAUCAUCGAgUCGGUGCUgUCgCGCUACa -3'
miRNA:   3'- -UGGUAGCUaAGCCGCGAgAG-GUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 171443 0.68 0.884447
Target:  5'- cGCCGUCG--UCGGCgaGCUCaUCCGCUg- -3'
miRNA:   3'- -UGGUAGCuaAGCCG--CGAG-AGGUGGug -5'
16133 5' -55.7 NC_004065.1 + 193856 0.68 0.897591
Target:  5'- uGCCGUCGcuucguccgCGGCGaCUC-CCGCCGa -3'
miRNA:   3'- -UGGUAGCuaa------GCCGC-GAGaGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 202106 0.66 0.964419
Target:  5'- uCUGUCGg--CGGCGCUCgcguUCCugCAUc -3'
miRNA:   3'- uGGUAGCuaaGCCGCGAG----AGGugGUG- -5'
16133 5' -55.7 NC_004065.1 + 159903 0.72 0.723777
Target:  5'- uCUGUCGA-UCGGCGC-CgccgCCGCCGCu -3'
miRNA:   3'- uGGUAGCUaAGCCGCGaGa---GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 205165 0.71 0.75148
Target:  5'- cACCGUCGAggccgccgUCgccgccaacaucgGGCGCcgcgugcgUCUCCACCACc -3'
miRNA:   3'- -UGGUAGCUa-------AG-------------CCGCG--------AGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 152819 0.71 0.789154
Target:  5'- gGCCAUCGccgugCGGgGCg--CCGCCGCg -3'
miRNA:   3'- -UGGUAGCuaa--GCCgCGagaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 115199 0.7 0.831968
Target:  5'- uGCCGgag--UCGGCGCUCccucUCUGCCGCg -3'
miRNA:   3'- -UGGUagcuaAGCCGCGAG----AGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 171398 0.69 0.863139
Target:  5'- cAUCcgCGAgacCGGCGa-CUCCGCCGCg -3'
miRNA:   3'- -UGGuaGCUaa-GCCGCgaGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 163381 0.68 0.884447
Target:  5'- uCCAUCaGcgUCaGCGCg-UCCGCCACg -3'
miRNA:   3'- uGGUAG-CuaAGcCGCGagAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 110576 0.69 0.870448
Target:  5'- cGCCAggcgUCGGUcUCGGCGa---CCACCACg -3'
miRNA:   3'- -UGGU----AGCUA-AGCCGCgagaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 101595 0.69 0.85563
Target:  5'- cGCCGcgcucagacUCGGUggCGGCGC-CgCCGCCGCu -3'
miRNA:   3'- -UGGU---------AGCUAa-GCCGCGaGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 161425 0.75 0.564938
Target:  5'- uCCAggugCGAcgugUCGGCGCUCUggaucgccgCCGCCGCg -3'
miRNA:   3'- uGGUa---GCUa---AGCCGCGAGA---------GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 99903 0.68 0.884447
Target:  5'- cGCCGUUGAUgcugcCGGCGUcuUCUUCGuCCAUg -3'
miRNA:   3'- -UGGUAGCUAa----GCCGCG--AGAGGU-GGUG- -5'
16133 5' -55.7 NC_004065.1 + 185067 0.72 0.694454
Target:  5'- cGCUGUCGAaggUCGGUguGCUCUUCGCCGu -3'
miRNA:   3'- -UGGUAGCUa--AGCCG--CGAGAGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 176170 0.7 0.831968
Target:  5'- gGCCAUCc---CGGCGCga-CCGCCGCg -3'
miRNA:   3'- -UGGUAGcuaaGCCGCGagaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 211943 0.68 0.884447
Target:  5'- gGCCA-CGAggcugCGGCGgUCgcugCCGCCAUc -3'
miRNA:   3'- -UGGUaGCUaa---GCCGCgAGa---GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 141597 0.68 0.891128
Target:  5'- cACCAacgCGAcggCGGCGggCUCCGCUGCc -3'
miRNA:   3'- -UGGUa--GCUaa-GCCGCgaGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 168214 0.72 0.704289
Target:  5'- cGCCGUCGAgucCGuGCGCUgCUaCUGCCACg -3'
miRNA:   3'- -UGGUAGCUaa-GC-CGCGA-GA-GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 209046 0.71 0.752422
Target:  5'- cACCAUCGA--CGGgGUUCgCCGCUACu -3'
miRNA:   3'- -UGGUAGCUaaGCCgCGAGaGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.