Results 21 - 40 of 85 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 99903 | 0.68 | 0.884447 |
Target: 5'- cGCCGUUGAUgcugcCGGCGUcuUCUUCGuCCAUg -3' miRNA: 3'- -UGGUAGCUAa----GCCGCG--AGAGGU-GGUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 168214 | 0.72 | 0.704289 |
Target: 5'- cGCCGUCGAgucCGuGCGCUgCUaCUGCCACg -3' miRNA: 3'- -UGGUAGCUaa-GC-CGCGA-GA-GGUGGUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 153630 | 0.66 | 0.961084 |
Target: 5'- cGCCAcUCGGacggCGGCgaGCUCaUCCGCgGCg -3' miRNA: 3'- -UGGU-AGCUaa--GCCG--CGAG-AGGUGgUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 43863 | 0.66 | 0.945602 |
Target: 5'- cGCCGUgGAgUUCGGUgGCggcCUCCACgGCc -3' miRNA: 3'- -UGGUAgCU-AAGCCG-CGa--GAGGUGgUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 171443 | 0.68 | 0.884447 |
Target: 5'- cGCCGUCG--UCGGCgaGCUCaUCCGCUg- -3' miRNA: 3'- -UGGUAGCuaAGCCG--CGAG-AGGUGGug -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 185067 | 0.72 | 0.694454 |
Target: 5'- cGCUGUCGAaggUCGGUguGCUCUUCGCCGu -3' miRNA: 3'- -UGGUAGCUa--AGCCG--CGAGAGGUGGUg -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 162280 | 0.67 | 0.936528 |
Target: 5'- cGCCGUCGGacgCGGCGCcgCUCgGCa-- -3' miRNA: 3'- -UGGUAGCUaa-GCCGCGa-GAGgUGgug -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 161425 | 0.75 | 0.564938 |
Target: 5'- uCCAggugCGAcgugUCGGCGCUCUggaucgccgCCGCCGCg -3' miRNA: 3'- uGGUa---GCUa---AGCCGCGAGA---------GGUGGUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 85613 | 0.76 | 0.487981 |
Target: 5'- gAUCAUCGAgUCGGUGCUgUCgCGCUACa -3' miRNA: 3'- -UGGUAGCUaAGCCGCGAgAG-GUGGUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 101595 | 0.69 | 0.85563 |
Target: 5'- cGCCGcgcucagacUCGGUggCGGCGC-CgCCGCCGCu -3' miRNA: 3'- -UGGU---------AGCUAa-GCCGCGaGaGGUGGUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 141597 | 0.68 | 0.891128 |
Target: 5'- cACCAacgCGAcggCGGCGggCUCCGCUGCc -3' miRNA: 3'- -UGGUa--GCUaa-GCCGCgaGAGGUGGUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 78884 | 0.67 | 0.926543 |
Target: 5'- cGCCGaCGAUcaucgCGGCGUUg-CCGCCGCc -3' miRNA: 3'- -UGGUaGCUAa----GCCGCGAgaGGUGGUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 136684 | 0.66 | 0.949802 |
Target: 5'- gGCCGgcggCGGgcCGGCucgaGCUUuuaUCCGCCACg -3' miRNA: 3'- -UGGUa---GCUaaGCCG----CGAG---AGGUGGUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 119630 | 0.66 | 0.957539 |
Target: 5'- cGCCGUCGGccgUGGCGUguUCgaacggCCugCGCg -3' miRNA: 3'- -UGGUAGCUaa-GCCGCG--AGa-----GGugGUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 181717 | 0.66 | 0.961084 |
Target: 5'- cAUCAUCGAUcccuUCGGCGCcaUCUUCGgaUACg -3' miRNA: 3'- -UGGUAGCUA----AGCCGCG--AGAGGUg-GUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 171398 | 0.69 | 0.863139 |
Target: 5'- cAUCcgCGAgacCGGCGa-CUCCGCCGCg -3' miRNA: 3'- -UGGuaGCUaa-GCCGCgaGAGGUGGUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 159903 | 0.72 | 0.723777 |
Target: 5'- uCUGUCGA-UCGGCGC-CgccgCCGCCGCu -3' miRNA: 3'- uGGUAGCUaAGCCGCGaGa---GGUGGUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 152819 | 0.71 | 0.789154 |
Target: 5'- gGCCAUCGccgugCGGgGCg--CCGCCGCg -3' miRNA: 3'- -UGGUAGCuaa--GCCgCGagaGGUGGUG- -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 138221 | 0.66 | 0.949802 |
Target: 5'- gACCGcgcucugCGAUgucgaGGCGCUCgCCGCCGu -3' miRNA: 3'- -UGGUa------GCUAag---CCGCGAGaGGUGGUg -5' |
|||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 52286 | 0.69 | 0.85563 |
Target: 5'- cCCAaaGAagggUCGGCGCacacUCUCCAUCGCu -3' miRNA: 3'- uGGUagCUa---AGCCGCG----AGAGGUGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home