miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16134 5' -58.5 NC_004065.1 + 67466 0.66 0.885196
Target:  5'- -cGAGGCGGCgGUGUaCGUGuGCGAc-- -3'
miRNA:   3'- aaCUCCGCUG-CGCG-GCACuCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 203117 0.66 0.885195
Target:  5'- -cGGGGUccGGCGUGCgGUcGAGCGGccUCUg -3'
miRNA:   3'- aaCUCCG--CUGCGCGgCA-CUCGCU--AGA- -5'
16134 5' -58.5 NC_004065.1 + 148869 0.66 0.878413
Target:  5'- -gGAGGCGGCG-GCgGgGGGCGAg-- -3'
miRNA:   3'- aaCUCCGCUGCgCGgCaCUCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 165112 0.66 0.878413
Target:  5'- cUGAGGCGGCGUcCCGcccGGCGA-CUg -3'
miRNA:   3'- aACUCCGCUGCGcGGCac-UCGCUaGA- -5'
16134 5' -58.5 NC_004065.1 + 77011 0.66 0.874944
Target:  5'- -gGAGGCGGCGUGCUGcgaccucgacucgGAGCuggcgcgGAUCg -3'
miRNA:   3'- aaCUCCGCUGCGCGGCa------------CUCG-------CUAGa -5'
16134 5' -58.5 NC_004065.1 + 105567 0.66 0.871425
Target:  5'- -aGcGGCacGGCGCGCCGUcGGCGggCUu -3'
miRNA:   3'- aaCuCCG--CUGCGCGGCAcUCGCuaGA- -5'
16134 5' -58.5 NC_004065.1 + 136630 0.66 0.871425
Target:  5'- -cGAGGCGGCG-GuCCG-GAGCGGc-- -3'
miRNA:   3'- aaCUCCGCUGCgC-GGCaCUCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 166238 0.66 0.864237
Target:  5'- aUUGAgGGCGAUaGUGuuGUcGGGUGAUCUu -3'
miRNA:   3'- -AACU-CCGCUG-CGCggCA-CUCGCUAGA- -5'
16134 5' -58.5 NC_004065.1 + 153350 0.66 0.864237
Target:  5'- -cGGGGaCGGCgGCGCCGac-GCGAUCc -3'
miRNA:   3'- aaCUCC-GCUG-CGCGGCacuCGCUAGa -5'
16134 5' -58.5 NC_004065.1 + 73004 0.66 0.856854
Target:  5'- -cGAgGGCGACGaUGCCGccacGAGCGAg-- -3'
miRNA:   3'- aaCU-CCGCUGC-GCGGCa---CUCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 95523 0.66 0.856854
Target:  5'- -cGAuGCGcAUGCGCCGauAGCGAUCa -3'
miRNA:   3'- aaCUcCGC-UGCGCGGCacUCGCUAGa -5'
16134 5' -58.5 NC_004065.1 + 197717 0.66 0.856854
Target:  5'- -cGucGCGGC-CGCCGUGAgcuucaccuugGCGAUCg -3'
miRNA:   3'- aaCucCGCUGcGCGGCACU-----------CGCUAGa -5'
16134 5' -58.5 NC_004065.1 + 34603 0.67 0.841524
Target:  5'- -cGAcGGCGACGCGgCGgGAGCGu--- -3'
miRNA:   3'- aaCU-CCGCUGCGCgGCaCUCGCuaga -5'
16134 5' -58.5 NC_004065.1 + 71985 0.67 0.841524
Target:  5'- -gGAGGCGACGCauGCCcuggagGUGAGCcugCUg -3'
miRNA:   3'- aaCUCCGCUGCG--CGG------CACUCGcuaGA- -5'
16134 5' -58.5 NC_004065.1 + 107778 0.67 0.839162
Target:  5'- -gGGGGUuagGACGCcgcccggauacuugGCCGUGGGCGAg-- -3'
miRNA:   3'- aaCUCCG---CUGCG--------------CGGCACUCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 137273 0.67 0.83359
Target:  5'- ---uGGCGAacaGgGCCGUGcucuuGGCGAUCUu -3'
miRNA:   3'- aacuCCGCUg--CgCGGCAC-----UCGCUAGA- -5'
16134 5' -58.5 NC_004065.1 + 101599 0.67 0.806231
Target:  5'- -aGAGGCGGCGCGCgucgcauaugaaaaCG-GGGCGGa-- -3'
miRNA:   3'- aaCUCCGCUGCGCG--------------GCaCUCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 29583 0.68 0.800212
Target:  5'- cUGAcGGCGGC-CGCgGUGAccGCGGUCc -3'
miRNA:   3'- aACU-CCGCUGcGCGgCACU--CGCUAGa -5'
16134 5' -58.5 NC_004065.1 + 68162 0.68 0.800212
Target:  5'- gUGAucgcGGCGGCGCGCgCGacgGAGCuGUCg -3'
miRNA:   3'- aACU----CCGCUGCGCG-GCa--CUCGcUAGa -5'
16134 5' -58.5 NC_004065.1 + 59147 0.68 0.791495
Target:  5'- -cGAGGCGACGaCGgCGaGAGUccGAUCg -3'
miRNA:   3'- aaCUCCGCUGC-GCgGCaCUCG--CUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.