miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16134 5' -58.5 NC_004065.1 + 140084 1.05 0.004118
Target:  5'- gUUGAGGCGACGCGCCGUGAGCGAUCUg -3'
miRNA:   3'- -AACUCCGCUGCGCGGCACUCGCUAGA- -5'
16134 5' -58.5 NC_004065.1 + 71952 0.74 0.466689
Target:  5'- -gGAGGCGACGcCGCCGgugGAGcCGggCa -3'
miRNA:   3'- aaCUCCGCUGC-GCGGCa--CUC-GCuaGa -5'
16134 5' -58.5 NC_004065.1 + 229681 0.71 0.629451
Target:  5'- -cGGGGCG-CGCGuCCGcucGGCGAUCUa -3'
miRNA:   3'- aaCUCCGCuGCGC-GGCac-UCGCUAGA- -5'
16134 5' -58.5 NC_004065.1 + 121435 0.7 0.65909
Target:  5'- -gGAGGCGAUGCGUgCGguugGAGCGGa-- -3'
miRNA:   3'- aaCUCCGCUGCGCG-GCa---CUCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 90783 0.7 0.687569
Target:  5'- -gGAGGCGACGCGCUGUcccGGCaggacgugacugaGGUCa -3'
miRNA:   3'- aaCUCCGCUGCGCGGCAc--UCG-------------CUAGa -5'
16134 5' -58.5 NC_004065.1 + 87601 0.7 0.688546
Target:  5'- cUGAGGagcCGGCGCGCCGgcaGGCGAa-- -3'
miRNA:   3'- aACUCC---GCUGCGCGGCac-UCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 120585 0.69 0.707978
Target:  5'- gUGAGGCGAuacaCGCGCCGccAGCGcggCUg -3'
miRNA:   3'- aACUCCGCU----GCGCGGCacUCGCua-GA- -5'
16134 5' -58.5 NC_004065.1 + 124987 0.69 0.72717
Target:  5'- -aGAGGCG-CGgGUCGUGcAGCGcgCUc -3'
miRNA:   3'- aaCUCCGCuGCgCGGCAC-UCGCuaGA- -5'
16134 5' -58.5 NC_004065.1 + 69289 0.69 0.746056
Target:  5'- cUGAGGCG-CGCGUaCGUGcaGGCGGUg- -3'
miRNA:   3'- aACUCCGCuGCGCG-GCAC--UCGCUAga -5'
16134 5' -58.5 NC_004065.1 + 142674 0.68 0.764569
Target:  5'- -aGGGGCGAgGgGgaGUGAGCGAUa- -3'
miRNA:   3'- aaCUCCGCUgCgCggCACUCGCUAga -5'
16134 5' -58.5 NC_004065.1 + 203081 0.68 0.773664
Target:  5'- -cGccGCGGC-CGCCG-GAGCGGUCUc -3'
miRNA:   3'- aaCucCGCUGcGCGGCaCUCGCUAGA- -5'
16134 5' -58.5 NC_004065.1 + 78584 0.68 0.782643
Target:  5'- aUGGGGuCGACGuCGCCGUcGAacGCGAcgUCg -3'
miRNA:   3'- aACUCC-GCUGC-GCGGCA-CU--CGCU--AGa -5'
16134 5' -58.5 NC_004065.1 + 59147 0.68 0.791495
Target:  5'- -cGAGGCGACGaCGgCGaGAGUccGAUCg -3'
miRNA:   3'- aaCUCCGCUGC-GCgGCaCUCG--CUAGa -5'
16134 5' -58.5 NC_004065.1 + 29583 0.68 0.800212
Target:  5'- cUGAcGGCGGC-CGCgGUGAccGCGGUCc -3'
miRNA:   3'- aACU-CCGCUGcGCGgCACU--CGCUAGa -5'
16134 5' -58.5 NC_004065.1 + 68162 0.68 0.800212
Target:  5'- gUGAucgcGGCGGCGCGCgCGacgGAGCuGUCg -3'
miRNA:   3'- aACU----CCGCUGCGCG-GCa--CUCGcUAGa -5'
16134 5' -58.5 NC_004065.1 + 101599 0.67 0.806231
Target:  5'- -aGAGGCGGCGCGCgucgcauaugaaaaCG-GGGCGGa-- -3'
miRNA:   3'- aaCUCCGCUGCGCG--------------GCaCUCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 137273 0.67 0.83359
Target:  5'- ---uGGCGAacaGgGCCGUGcucuuGGCGAUCUu -3'
miRNA:   3'- aacuCCGCUg--CgCGGCAC-----UCGCUAGA- -5'
16134 5' -58.5 NC_004065.1 + 107778 0.67 0.839162
Target:  5'- -gGGGGUuagGACGCcgcccggauacuugGCCGUGGGCGAg-- -3'
miRNA:   3'- aaCUCCG---CUGCG--------------CGGCACUCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 71985 0.67 0.841524
Target:  5'- -gGAGGCGACGCauGCCcuggagGUGAGCcugCUg -3'
miRNA:   3'- aaCUCCGCUGCG--CGG------CACUCGcuaGA- -5'
16134 5' -58.5 NC_004065.1 + 34603 0.67 0.841524
Target:  5'- -cGAcGGCGACGCGgCGgGAGCGu--- -3'
miRNA:   3'- aaCU-CCGCUGCGCgGCaCUCGCuaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.