miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16134 5' -58.5 NC_004065.1 + 229681 0.71 0.629451
Target:  5'- -cGGGGCG-CGCGuCCGcucGGCGAUCUa -3'
miRNA:   3'- aaCUCCGCuGCGC-GGCac-UCGCUAGA- -5'
16134 5' -58.5 NC_004065.1 + 203117 0.66 0.885195
Target:  5'- -cGGGGUccGGCGUGCgGUcGAGCGGccUCUg -3'
miRNA:   3'- aaCUCCG--CUGCGCGgCA-CUCGCU--AGA- -5'
16134 5' -58.5 NC_004065.1 + 203081 0.68 0.773664
Target:  5'- -cGccGCGGC-CGCCG-GAGCGGUCUc -3'
miRNA:   3'- aaCucCGCUGcGCGGCaCUCGCUAGA- -5'
16134 5' -58.5 NC_004065.1 + 197717 0.66 0.856854
Target:  5'- -cGucGCGGC-CGCCGUGAgcuucaccuugGCGAUCg -3'
miRNA:   3'- aaCucCGCUGcGCGGCACU-----------CGCUAGa -5'
16134 5' -58.5 NC_004065.1 + 166238 0.66 0.864237
Target:  5'- aUUGAgGGCGAUaGUGuuGUcGGGUGAUCUu -3'
miRNA:   3'- -AACU-CCGCUG-CGCggCA-CUCGCUAGA- -5'
16134 5' -58.5 NC_004065.1 + 165112 0.66 0.878413
Target:  5'- cUGAGGCGGCGUcCCGcccGGCGA-CUg -3'
miRNA:   3'- aACUCCGCUGCGcGGCac-UCGCUaGA- -5'
16134 5' -58.5 NC_004065.1 + 153350 0.66 0.864237
Target:  5'- -cGGGGaCGGCgGCGCCGac-GCGAUCc -3'
miRNA:   3'- aaCUCC-GCUG-CGCGGCacuCGCUAGa -5'
16134 5' -58.5 NC_004065.1 + 148869 0.66 0.878413
Target:  5'- -gGAGGCGGCG-GCgGgGGGCGAg-- -3'
miRNA:   3'- aaCUCCGCUGCgCGgCaCUCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 142674 0.68 0.764569
Target:  5'- -aGGGGCGAgGgGgaGUGAGCGAUa- -3'
miRNA:   3'- aaCUCCGCUgCgCggCACUCGCUAga -5'
16134 5' -58.5 NC_004065.1 + 140084 1.05 0.004118
Target:  5'- gUUGAGGCGACGCGCCGUGAGCGAUCUg -3'
miRNA:   3'- -AACUCCGCUGCGCGGCACUCGCUAGA- -5'
16134 5' -58.5 NC_004065.1 + 137273 0.67 0.83359
Target:  5'- ---uGGCGAacaGgGCCGUGcucuuGGCGAUCUu -3'
miRNA:   3'- aacuCCGCUg--CgCGGCAC-----UCGCUAGA- -5'
16134 5' -58.5 NC_004065.1 + 136630 0.66 0.871425
Target:  5'- -cGAGGCGGCG-GuCCG-GAGCGGc-- -3'
miRNA:   3'- aaCUCCGCUGCgC-GGCaCUCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 124987 0.69 0.72717
Target:  5'- -aGAGGCG-CGgGUCGUGcAGCGcgCUc -3'
miRNA:   3'- aaCUCCGCuGCgCGGCAC-UCGCuaGA- -5'
16134 5' -58.5 NC_004065.1 + 121435 0.7 0.65909
Target:  5'- -gGAGGCGAUGCGUgCGguugGAGCGGa-- -3'
miRNA:   3'- aaCUCCGCUGCGCG-GCa---CUCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 120585 0.69 0.707978
Target:  5'- gUGAGGCGAuacaCGCGCCGccAGCGcggCUg -3'
miRNA:   3'- aACUCCGCU----GCGCGGCacUCGCua-GA- -5'
16134 5' -58.5 NC_004065.1 + 107778 0.67 0.839162
Target:  5'- -gGGGGUuagGACGCcgcccggauacuugGCCGUGGGCGAg-- -3'
miRNA:   3'- aaCUCCG---CUGCG--------------CGGCACUCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 105567 0.66 0.871425
Target:  5'- -aGcGGCacGGCGCGCCGUcGGCGggCUu -3'
miRNA:   3'- aaCuCCG--CUGCGCGGCAcUCGCuaGA- -5'
16134 5' -58.5 NC_004065.1 + 101599 0.67 0.806231
Target:  5'- -aGAGGCGGCGCGCgucgcauaugaaaaCG-GGGCGGa-- -3'
miRNA:   3'- aaCUCCGCUGCGCG--------------GCaCUCGCUaga -5'
16134 5' -58.5 NC_004065.1 + 95523 0.66 0.856854
Target:  5'- -cGAuGCGcAUGCGCCGauAGCGAUCa -3'
miRNA:   3'- aaCUcCGC-UGCGCGGCacUCGCUAGa -5'
16134 5' -58.5 NC_004065.1 + 90783 0.7 0.687569
Target:  5'- -gGAGGCGACGCGCUGUcccGGCaggacgugacugaGGUCa -3'
miRNA:   3'- aaCUCCGCUGCGCGGCAc--UCG-------------CUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.