miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16135 5' -57.8 NC_004065.1 + 26967 0.66 0.922411
Target:  5'- uGGCGGugGUGGUGCGcUGCCUCaaaCGUc -3'
miRNA:   3'- uCUGCC--CAUCACGC-AUGGAGgg-GCAc -5'
16135 5' -57.8 NC_004065.1 + 161715 0.66 0.905581
Target:  5'- gAGACacacGGUGGUaGCGUgaucauuuuAUUUCCCCGUGc -3'
miRNA:   3'- -UCUGc---CCAUCA-CGCA---------UGGAGGGGCAC- -5'
16135 5' -57.8 NC_004065.1 + 139890 0.66 0.899539
Target:  5'- cGGACGaGGUGGccGCGggGCCUCCggCCGg- -3'
miRNA:   3'- -UCUGC-CCAUCa-CGCa-UGGAGG--GGCac -5'
16135 5' -57.8 NC_004065.1 + 142533 0.67 0.893285
Target:  5'- uGGCGaGGUuGUGCGaUAUCUgCCCgGUGg -3'
miRNA:   3'- uCUGC-CCAuCACGC-AUGGA-GGGgCAC- -5'
16135 5' -57.8 NC_004065.1 + 38222 0.67 0.890724
Target:  5'- aGGACGGGcggGGUGUGUAUCggacuguucucggCCCUGa- -3'
miRNA:   3'- -UCUGCCCa--UCACGCAUGGa------------GGGGCac -5'
16135 5' -57.8 NC_004065.1 + 23622 0.69 0.780566
Target:  5'- cAGGCGGGUGGacggGCGgcugGCCUCgggccgacgcaggagCCCGUu -3'
miRNA:   3'- -UCUGCCCAUCa---CGCa---UGGAG---------------GGGCAc -5'
16135 5' -57.8 NC_004065.1 + 210197 0.7 0.749775
Target:  5'- gAGACGGGaGGaGCGUGCUugagaccgugUCCCCuGUGc -3'
miRNA:   3'- -UCUGCCCaUCaCGCAUGG----------AGGGG-CAC- -5'
16135 5' -57.8 NC_004065.1 + 54558 0.7 0.73113
Target:  5'- cGAUGGGgcGUGCucgcagccuccuGUGCUUCgCCGUGa -3'
miRNA:   3'- uCUGCCCauCACG------------CAUGGAGgGGCAC- -5'
16135 5' -57.8 NC_004065.1 + 26149 0.71 0.692962
Target:  5'- gAGcCGGGgucUGCGUGCCagccguccuauUCCCCGUGc -3'
miRNA:   3'- -UCuGCCCaucACGCAUGG-----------AGGGGCAC- -5'
16135 5' -57.8 NC_004065.1 + 140700 0.99 0.015255
Target:  5'- gAGACGGGUAGUGCGUACC-CCCCGUGu -3'
miRNA:   3'- -UCUGCCCAUCACGCAUGGaGGGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.