miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16137 5' -58.2 NC_004065.1 + 229643 0.66 0.892673
Target:  5'- gUGCGcCAUCCc---GGCCGgCGGCAGu -3'
miRNA:   3'- -ACGUuGUAGGaccaCCGGUgGCCGUC- -5'
16137 5' -58.2 NC_004065.1 + 114858 0.66 0.886105
Target:  5'- gGC--CAUCCUGGcgacgacgGuGCCGCCGGCc- -3'
miRNA:   3'- aCGuuGUAGGACCa-------C-CGGUGGCCGuc -5'
16137 5' -58.2 NC_004065.1 + 189812 0.66 0.886105
Target:  5'- aGCggUGUCUUGG-GGUCAagauggugaaCGGCAGg -3'
miRNA:   3'- aCGuuGUAGGACCaCCGGUg---------GCCGUC- -5'
16137 5' -58.2 NC_004065.1 + 41273 0.66 0.879326
Target:  5'- cGCGAuCGcCCUGGUGggcuucGCCGCCGuGCGc -3'
miRNA:   3'- aCGUU-GUaGGACCAC------CGGUGGC-CGUc -5'
16137 5' -58.2 NC_004065.1 + 31520 0.66 0.879326
Target:  5'- gUGCGACGUgCCgcGG-GGCUAccCCGGCAu -3'
miRNA:   3'- -ACGUUGUA-GGa-CCaCCGGU--GGCCGUc -5'
16137 5' -58.2 NC_004065.1 + 167539 0.66 0.879326
Target:  5'- aGCGGgGUCCuUGGUGGUgAU-GGCGGu -3'
miRNA:   3'- aCGUUgUAGG-ACCACCGgUGgCCGUC- -5'
16137 5' -58.2 NC_004065.1 + 97367 0.66 0.879326
Target:  5'- cGCGACAgaucucguUCUgacagcGGUGGCCGCgcaGGUAGu -3'
miRNA:   3'- aCGUUGU--------AGGa-----CCACCGGUGg--CCGUC- -5'
16137 5' -58.2 NC_004065.1 + 196434 0.66 0.879326
Target:  5'- aGCAGCAUCgUGaUGccguccGCCACgCGGUAGa -3'
miRNA:   3'- aCGUUGUAGgACcAC------CGGUG-GCCGUC- -5'
16137 5' -58.2 NC_004065.1 + 30114 0.66 0.879326
Target:  5'- cUGCAGCcccggcggCCUGGggagGGCgGgUGGCGGa -3'
miRNA:   3'- -ACGUUGua------GGACCa---CCGgUgGCCGUC- -5'
16137 5' -58.2 NC_004065.1 + 109841 0.66 0.872341
Target:  5'- cUGCGGCGg---GG-GGCCAUCGcGCAGg -3'
miRNA:   3'- -ACGUUGUaggaCCaCCGGUGGC-CGUC- -5'
16137 5' -58.2 NC_004065.1 + 122716 0.66 0.872341
Target:  5'- gUGCugAGCGUUCUGGcgucgguagUGGCCAgaGGCAa -3'
miRNA:   3'- -ACG--UUGUAGGACC---------ACCGGUggCCGUc -5'
16137 5' -58.2 NC_004065.1 + 66634 0.66 0.865152
Target:  5'- gGCGACAUCgUcggcuucggcgcGGUGGgCGCCcGGCGa -3'
miRNA:   3'- aCGUUGUAGgA------------CCACCgGUGG-CCGUc -5'
16137 5' -58.2 NC_004065.1 + 147168 0.67 0.857767
Target:  5'- aGCGGCGUgCUcuucGCCACCGGCAa -3'
miRNA:   3'- aCGUUGUAgGAccacCGGUGGCCGUc -5'
16137 5' -58.2 NC_004065.1 + 152518 0.67 0.857767
Target:  5'- cGCAGC-UCCUcGGgcuCCGCCGGCGc -3'
miRNA:   3'- aCGUUGuAGGA-CCaccGGUGGCCGUc -5'
16137 5' -58.2 NC_004065.1 + 63715 0.67 0.85019
Target:  5'- cGUGAUcgCCUGGUGGUCGgCGccGUAGa -3'
miRNA:   3'- aCGUUGuaGGACCACCGGUgGC--CGUC- -5'
16137 5' -58.2 NC_004065.1 + 162147 0.67 0.85019
Target:  5'- cGCucggGCAaCCUGaucGGCCGCCGGCu- -3'
miRNA:   3'- aCGu---UGUaGGACca-CCGGUGGCCGuc -5'
16137 5' -58.2 NC_004065.1 + 89035 0.67 0.85019
Target:  5'- gGCAGCugCC-GGUGGCCACCaggauguuGCAGu -3'
miRNA:   3'- aCGUUGuaGGaCCACCGGUGGc-------CGUC- -5'
16137 5' -58.2 NC_004065.1 + 32013 0.67 0.85019
Target:  5'- cGCGACcgCCUccgaGGCCAUCGcGCAGu -3'
miRNA:   3'- aCGUUGuaGGAcca-CCGGUGGC-CGUC- -5'
16137 5' -58.2 NC_004065.1 + 142765 0.67 0.85019
Target:  5'- cGCGACGacgacggccUgCUGGUGGUggCGCCGGgGGc -3'
miRNA:   3'- aCGUUGU---------AgGACCACCG--GUGGCCgUC- -5'
16137 5' -58.2 NC_004065.1 + 168618 0.67 0.85019
Target:  5'- aGCGGCugcuggCgCUGGU-GCCGCgGGCGGa -3'
miRNA:   3'- aCGUUGua----G-GACCAcCGGUGgCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.