miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16138 3' -54.9 NC_004065.1 + 136632 0.66 0.986204
Target:  5'- aGGCGgCGGUC-CggagCGGCGUggauccugGugGCg -3'
miRNA:   3'- gCCGCaGCCAGuGaa--GCUGCA--------CugCG- -5'
16138 3' -54.9 NC_004065.1 + 186676 0.66 0.986204
Target:  5'- aCGaGUGUCGGggaCGCggCG-CGUGGgGCg -3'
miRNA:   3'- -GC-CGCAGCCa--GUGaaGCuGCACUgCG- -5'
16138 3' -54.9 NC_004065.1 + 27833 0.66 0.986204
Target:  5'- cCGGgGU-GGUgGCUggcCGugGUGcCGCg -3'
miRNA:   3'- -GCCgCAgCCAgUGAa--GCugCACuGCG- -5'
16138 3' -54.9 NC_004065.1 + 124879 0.66 0.986204
Target:  5'- aGGUGccCGGguugCGCUccUCGAUGUG-CGCc -3'
miRNA:   3'- gCCGCa-GCCa---GUGA--AGCUGCACuGCG- -5'
16138 3' -54.9 NC_004065.1 + 167777 0.66 0.986204
Target:  5'- uCGGCGUCucuuUCugUagacCGGCGUGACcGCu -3'
miRNA:   3'- -GCCGCAGcc--AGugAa---GCUGCACUG-CG- -5'
16138 3' -54.9 NC_004065.1 + 102027 0.66 0.986046
Target:  5'- gCGGCGggccaccUCGGUgACccgCGGCGgccgGGCGUu -3'
miRNA:   3'- -GCCGC-------AGCCAgUGaa-GCUGCa---CUGCG- -5'
16138 3' -54.9 NC_004065.1 + 135857 0.66 0.986046
Target:  5'- gGGUGUCGuGUCGgUUgggcCGAUGUGAucugguaCGCg -3'
miRNA:   3'- gCCGCAGC-CAGUgAA----GCUGCACU-------GCG- -5'
16138 3' -54.9 NC_004065.1 + 29630 0.66 0.984556
Target:  5'- uCGaCGUCGGgCGCguaGAUGUaGACGCg -3'
miRNA:   3'- -GCcGCAGCCaGUGaagCUGCA-CUGCG- -5'
16138 3' -54.9 NC_004065.1 + 97932 0.66 0.984556
Target:  5'- cCGcGCGUcCGG-CAC--CGGCGUGGCaGCg -3'
miRNA:   3'- -GC-CGCA-GCCaGUGaaGCUGCACUG-CG- -5'
16138 3' -54.9 NC_004065.1 + 61631 0.66 0.984556
Target:  5'- aCGG-GUCGGUCuggaugaGACGguUGGCGCu -3'
miRNA:   3'- -GCCgCAGCCAGugaag--CUGC--ACUGCG- -5'
16138 3' -54.9 NC_004065.1 + 122175 0.66 0.982761
Target:  5'- aCGGUuUCGGgugUACUUCGuCGUGcccaucuacgGCGCc -3'
miRNA:   3'- -GCCGcAGCCa--GUGAAGCuGCAC----------UGCG- -5'
16138 3' -54.9 NC_004065.1 + 128154 0.66 0.982761
Target:  5'- cCGGCGUCGucGUCuGCggCGGCGauaGCGCc -3'
miRNA:   3'- -GCCGCAGC--CAG-UGaaGCUGCac-UGCG- -5'
16138 3' -54.9 NC_004065.1 + 118652 0.66 0.981612
Target:  5'- uCGGCGUCGGaCGa--CGACGccucguccugggacGACGCg -3'
miRNA:   3'- -GCCGCAGCCaGUgaaGCUGCa-------------CUGCG- -5'
16138 3' -54.9 NC_004065.1 + 30714 0.66 0.980814
Target:  5'- aGGUGgCGGaCGCguugaaCGACGUGgACGCc -3'
miRNA:   3'- gCCGCaGCCaGUGaa----GCUGCAC-UGCG- -5'
16138 3' -54.9 NC_004065.1 + 186739 0.66 0.980814
Target:  5'- uCGuCGUCuGGUCGCgggUCGACGacGACGa -3'
miRNA:   3'- -GCcGCAG-CCAGUGa--AGCUGCa-CUGCg -5'
16138 3' -54.9 NC_004065.1 + 1811 0.66 0.980814
Target:  5'- gCGGCGgCGaUCGCgguuccCGugGUGACGg -3'
miRNA:   3'- -GCCGCaGCcAGUGaa----GCugCACUGCg -5'
16138 3' -54.9 NC_004065.1 + 184818 0.66 0.980814
Target:  5'- aCGGUGgCGGUgGCggcagcggCGGCGUGuuGCc -3'
miRNA:   3'- -GCCGCaGCCAgUGaa------GCUGCACugCG- -5'
16138 3' -54.9 NC_004065.1 + 163448 0.66 0.978707
Target:  5'- cCGuGCaGUCGGcCACUUCGAUGgguaGCu -3'
miRNA:   3'- -GC-CG-CAGCCaGUGAAGCUGCacugCG- -5'
16138 3' -54.9 NC_004065.1 + 61831 0.66 0.978707
Target:  5'- aCGGCGUC-GUCAaacaaGGCGUcGCGCc -3'
miRNA:   3'- -GCCGCAGcCAGUgaag-CUGCAcUGCG- -5'
16138 3' -54.9 NC_004065.1 + 106568 0.66 0.978707
Target:  5'- -aGCG-CgGGUCGCUgggCGACGUGAucuacaacaccCGCa -3'
miRNA:   3'- gcCGCaG-CCAGUGAa--GCUGCACU-----------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.