miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16138 3' -54.9 NC_004065.1 + 327 0.71 0.838338
Target:  5'- aCGGCGUgGGUgACUuagaUCGccgaGCG-GACGCg -3'
miRNA:   3'- -GCCGCAgCCAgUGA----AGC----UGCaCUGCG- -5'
16138 3' -54.9 NC_004065.1 + 1811 0.66 0.980814
Target:  5'- gCGGCGgCGaUCGCgguuccCGugGUGACGg -3'
miRNA:   3'- -GCCGCaGCcAGUGaa----GCugCACUGCg -5'
16138 3' -54.9 NC_004065.1 + 19566 0.67 0.962349
Target:  5'- gGGUGUCGGUgGCggCGguaGCGUcGGCuGCg -3'
miRNA:   3'- gCCGCAGCCAgUGaaGC---UGCA-CUG-CG- -5'
16138 3' -54.9 NC_004065.1 + 22131 0.68 0.955346
Target:  5'- uCGGUGUggagccCGGcccCGCUacccuUCGACGUGACGg -3'
miRNA:   3'- -GCCGCA------GCCa--GUGA-----AGCUGCACUGCg -5'
16138 3' -54.9 NC_004065.1 + 24862 0.68 0.947509
Target:  5'- gCGGCGaCGGcgGCcUCGACG-GugGCa -3'
miRNA:   3'- -GCCGCaGCCagUGaAGCUGCaCugCG- -5'
16138 3' -54.9 NC_004065.1 + 27833 0.66 0.986204
Target:  5'- cCGGgGU-GGUgGCUggcCGugGUGcCGCg -3'
miRNA:   3'- -GCCgCAgCCAgUGAa--GCugCACuGCG- -5'
16138 3' -54.9 NC_004065.1 + 28861 0.73 0.788266
Target:  5'- uGGUGUCGG-CGCUgCuGCGUGACGa -3'
miRNA:   3'- gCCGCAGCCaGUGAaGcUGCACUGCg -5'
16138 3' -54.9 NC_004065.1 + 28994 0.67 0.971361
Target:  5'- cCGGCGgCGGUgGCga-GGCGccGCGCg -3'
miRNA:   3'- -GCCGCaGCCAgUGaagCUGCacUGCG- -5'
16138 3' -54.9 NC_004065.1 + 29630 0.66 0.984556
Target:  5'- uCGaCGUCGGgCGCguaGAUGUaGACGCg -3'
miRNA:   3'- -GCcGCAGCCaGUGaagCUGCA-CUGCG- -5'
16138 3' -54.9 NC_004065.1 + 30460 0.67 0.965548
Target:  5'- gCGGCGUCuGGacCGCggcaCGAUGgGGCGCg -3'
miRNA:   3'- -GCCGCAG-CCa-GUGaa--GCUGCaCUGCG- -5'
16138 3' -54.9 NC_004065.1 + 30714 0.66 0.980814
Target:  5'- aGGUGgCGGaCGCguugaaCGACGUGgACGCc -3'
miRNA:   3'- gCCGCaGCCaGUGaa----GCUGCAC-UGCG- -5'
16138 3' -54.9 NC_004065.1 + 30898 0.73 0.785626
Target:  5'- gGGCGUCGGggucgCACUcguguccgucgacaUCGcCGgGACGCa -3'
miRNA:   3'- gCCGCAGCCa----GUGA--------------AGCuGCaCUGCG- -5'
16138 3' -54.9 NC_004065.1 + 31371 0.68 0.947509
Target:  5'- aCGGCGUCGGacgaCACgcUGcACcugGUGGCGCg -3'
miRNA:   3'- -GCCGCAGCCa---GUGaaGC-UG---CACUGCG- -5'
16138 3' -54.9 NC_004065.1 + 33641 0.7 0.895266
Target:  5'- -cGCGuUCGGggcgCGCUUCGAcCGUccGGCGCg -3'
miRNA:   3'- gcCGC-AGCCa---GUGAAGCU-GCA--CUGCG- -5'
16138 3' -54.9 NC_004065.1 + 35602 0.68 0.947509
Target:  5'- gCGGUGUCGGUgcgggaucCACggCGGCGgcGGCGg -3'
miRNA:   3'- -GCCGCAGCCA--------GUGaaGCUGCa-CUGCg -5'
16138 3' -54.9 NC_004065.1 + 36296 0.69 0.938813
Target:  5'- aGGCGaUGG-CGcCUUCGACGcUGAuCGCa -3'
miRNA:   3'- gCCGCaGCCaGU-GAAGCUGC-ACU-GCG- -5'
16138 3' -54.9 NC_004065.1 + 38131 0.69 0.934137
Target:  5'- -cGCGcCGG--ACUUCGGCGUG-CGCa -3'
miRNA:   3'- gcCGCaGCCagUGAAGCUGCACuGCG- -5'
16138 3' -54.9 NC_004065.1 + 41413 0.67 0.96855
Target:  5'- cCGGCGacaCGGUCGCcgUGACGgaccgaGACGg -3'
miRNA:   3'- -GCCGCa--GCCAGUGaaGCUGCa-----CUGCg -5'
16138 3' -54.9 NC_004065.1 + 42031 0.67 0.968549
Target:  5'- gCGGCGg-GGUCgaagaagaagACUUaCGGCGUGcugGCGCu -3'
miRNA:   3'- -GCCGCagCCAG----------UGAA-GCUGCAC---UGCG- -5'
16138 3' -54.9 NC_004065.1 + 45740 0.7 0.907462
Target:  5'- uGGCGUgguaGGggGCUUCuaauuACGUGACGCa -3'
miRNA:   3'- gCCGCAg---CCagUGAAGc----UGCACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.