miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16138 5' -52.9 NC_004065.1 + 86890 0.66 0.991853
Target:  5'- aUGCUCAUCGAa-GUGAUCaUGUCGAc -3'
miRNA:   3'- cACGAGUAGUUgaUACUGGcGCGGCU- -5'
16138 5' -52.9 NC_004065.1 + 225152 0.66 0.991853
Target:  5'- -cGCUCcUCcuggGUGACCGaGCCGAg -3'
miRNA:   3'- caCGAGuAGuugaUACUGGCgCGGCU- -5'
16138 5' -52.9 NC_004065.1 + 163241 0.66 0.991743
Target:  5'- -cGCUCAuguuucgUCGGCgcagcGGCgGCGCCGGc -3'
miRNA:   3'- caCGAGU-------AGUUGaua--CUGgCGCGGCU- -5'
16138 5' -52.9 NC_004065.1 + 90911 0.66 0.990704
Target:  5'- -aGCUCGg-AGCa--GACCGCGUCGAc -3'
miRNA:   3'- caCGAGUagUUGauaCUGGCGCGGCU- -5'
16138 5' -52.9 NC_004065.1 + 102608 0.66 0.990704
Target:  5'- uGUGCUCcucGUCGACgGUGACgGC-CUGGg -3'
miRNA:   3'- -CACGAG---UAGUUGaUACUGgCGcGGCU- -5'
16138 5' -52.9 NC_004065.1 + 200001 0.66 0.990704
Target:  5'- cGUGCcCGUCAcC----ACCGCGCCGGu -3'
miRNA:   3'- -CACGaGUAGUuGauacUGGCGCGGCU- -5'
16138 5' -52.9 NC_004065.1 + 193122 0.66 0.990704
Target:  5'- cGUGCUCAgUCuGCUGauguUGuCCGCGUCa- -3'
miRNA:   3'- -CACGAGU-AGuUGAU----ACuGGCGCGGcu -5'
16138 5' -52.9 NC_004065.1 + 163567 0.66 0.990704
Target:  5'- -cGCgCGUaCAGCUucgugaucGACCGCGUCGAg -3'
miRNA:   3'- caCGaGUA-GUUGAua------CUGGCGCGGCU- -5'
16138 5' -52.9 NC_004065.1 + 119040 0.66 0.990582
Target:  5'- cGUGCUCGUCAacacgacGCUcUGACC-CGUCc- -3'
miRNA:   3'- -CACGAGUAGU-------UGAuACUGGcGCGGcu -5'
16138 5' -52.9 NC_004065.1 + 151505 0.66 0.989296
Target:  5'- -gGCUCcUCAGCgGUGuucugagGCCGCuGCCGGc -3'
miRNA:   3'- caCGAGuAGUUGaUAC-------UGGCG-CGGCU- -5'
16138 5' -52.9 NC_004065.1 + 11083 0.66 0.986641
Target:  5'- -cGCUCGUCAcgacaccugguucuGCgaacguuucaacGACCGCGUCGAu -3'
miRNA:   3'- caCGAGUAGU--------------UGaua---------CUGGCGCGGCU- -5'
16138 5' -52.9 NC_004065.1 + 110125 0.67 0.984785
Target:  5'- -cGagagCGUCuuCUccGGCCGCGCCGGc -3'
miRNA:   3'- caCga--GUAGuuGAuaCUGGCGCGGCU- -5'
16138 5' -52.9 NC_004065.1 + 178827 0.67 0.984785
Target:  5'- -cGCUCuu---CUcUGACCGCGCCa- -3'
miRNA:   3'- caCGAGuaguuGAuACUGGCGCGGcu -5'
16138 5' -52.9 NC_004065.1 + 167667 0.67 0.982934
Target:  5'- nGUGCUCGgaacccgCGACgcgucaGUGAUCGuCGCCGu -3'
miRNA:   3'- -CACGAGUa------GUUGa-----UACUGGC-GCGGCu -5'
16138 5' -52.9 NC_004065.1 + 43029 0.67 0.980918
Target:  5'- uUGCUCGcUCGAUggaaACCGCGUCGGc -3'
miRNA:   3'- cACGAGU-AGUUGauacUGGCGCGGCU- -5'
16138 5' -52.9 NC_004065.1 + 56096 0.67 0.980918
Target:  5'- cUGCUCG-CAGCagacGUGACCGUcCCGGa -3'
miRNA:   3'- cACGAGUaGUUGa---UACUGGCGcGGCU- -5'
16138 5' -52.9 NC_004065.1 + 120060 0.67 0.980918
Target:  5'- -aGgaCGUCGuCggaGACCGCGCCGGa -3'
miRNA:   3'- caCgaGUAGUuGauaCUGGCGCGGCU- -5'
16138 5' -52.9 NC_004065.1 + 174138 0.67 0.978729
Target:  5'- gGUGCggCAUCGGcCUGgacgccgGAUCGaCGCCGAu -3'
miRNA:   3'- -CACGa-GUAGUU-GAUa------CUGGC-GCGGCU- -5'
16138 5' -52.9 NC_004065.1 + 182636 0.67 0.978729
Target:  5'- -cGCUCucgugcCGACggcGGCCGCGCUGGa -3'
miRNA:   3'- caCGAGua----GUUGauaCUGGCGCGGCU- -5'
16138 5' -52.9 NC_004065.1 + 102785 0.67 0.978269
Target:  5'- -cGCUCAUCAucccgccACCGCGcCCGAu -3'
miRNA:   3'- caCGAGUAGUugauac-UGGCGC-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.