miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16139 5' -57.6 NC_004065.1 + 60696 0.66 0.927551
Target:  5'- gCGAGACgGUgAuGGCGCUgcGCCCGu- -3'
miRNA:   3'- gGUUCUGgCAgUcCCGCGA--CGGGUuc -5'
16139 5' -57.6 NC_004065.1 + 55418 0.66 0.927551
Target:  5'- gCCugauGGGCUGUcCGGGGCGCggGUCUucGAGu -3'
miRNA:   3'- -GGu---UCUGGCA-GUCCCGCGa-CGGG--UUC- -5'
16139 5' -57.6 NC_004065.1 + 21960 0.66 0.924459
Target:  5'- gCCAGGGCCGUCgucggcaggacggugAGGGCcGCcacgGCCa--- -3'
miRNA:   3'- -GGUUCUGGCAG---------------UCCCG-CGa---CGGguuc -5'
16139 5' -57.6 NC_004065.1 + 88564 0.66 0.922354
Target:  5'- gCCAcGugUccCAGGGCGCagagGUCCGAGa -3'
miRNA:   3'- -GGUuCugGcaGUCCCGCGa---CGGGUUC- -5'
16139 5' -57.6 NC_004065.1 + 87318 0.66 0.922354
Target:  5'- ----cACCGUCuGGGCauccauauccaGCUGCaCCAAGa -3'
miRNA:   3'- gguucUGGCAGuCCCG-----------CGACG-GGUUC- -5'
16139 5' -57.6 NC_004065.1 + 143883 0.66 0.920752
Target:  5'- -gAGGAucUCGUCAGGuGCGCggacgggacgguggUGCCCAGc -3'
miRNA:   3'- ggUUCU--GGCAGUCC-CGCG--------------ACGGGUUc -5'
16139 5' -57.6 NC_004065.1 + 92419 0.66 0.916936
Target:  5'- uCCAacgcuuaucGGGCgGgCAGGGCGUUGCCa--- -3'
miRNA:   3'- -GGU---------UCUGgCaGUCCCGCGACGGguuc -5'
16139 5' -57.6 NC_004065.1 + 127787 0.66 0.916936
Target:  5'- gCUccGACCGguaugUCAuGGccGUGCUGCCCAAGc -3'
miRNA:   3'- -GGuuCUGGC-----AGU-CC--CGCGACGGGUUC- -5'
16139 5' -57.6 NC_004065.1 + 104326 0.66 0.916936
Target:  5'- cCCAGggggauGAUCGggUCAGGGCGCucUGCCggCGAGa -3'
miRNA:   3'- -GGUU------CUGGC--AGUCCCGCG--ACGG--GUUC- -5'
16139 5' -57.6 NC_004065.1 + 20049 0.66 0.911299
Target:  5'- --cAGAUCGUC-GGGUGCUcucGCUCGAGc -3'
miRNA:   3'- gguUCUGGCAGuCCCGCGA---CGGGUUC- -5'
16139 5' -57.6 NC_004065.1 + 176531 0.66 0.911299
Target:  5'- -gAAGAUUGUC-GGGUGaacGCCCGAGa -3'
miRNA:   3'- ggUUCUGGCAGuCCCGCga-CGGGUUC- -5'
16139 5' -57.6 NC_004065.1 + 222717 0.66 0.905443
Target:  5'- aCCGGcucGAUCGUCAGGaGCucCUcGCCCGGGa -3'
miRNA:   3'- -GGUU---CUGGCAGUCC-CGc-GA-CGGGUUC- -5'
16139 5' -57.6 NC_004065.1 + 197026 0.66 0.905443
Target:  5'- aCCGAcGACCGUCAGGG-GUUcGUCgCAAc -3'
miRNA:   3'- -GGUU-CUGGCAGUCCCgCGA-CGG-GUUc -5'
16139 5' -57.6 NC_004065.1 + 81842 0.66 0.905443
Target:  5'- gUCGGGGa--UCGGGGCGCacgGCCCGAu -3'
miRNA:   3'- -GGUUCUggcAGUCCCGCGa--CGGGUUc -5'
16139 5' -57.6 NC_004065.1 + 75733 0.66 0.904845
Target:  5'- aCC-GGGCCGUguuugcgCAGGcugccccaGCGCUGaCCCGGGg -3'
miRNA:   3'- -GGuUCUGGCA-------GUCC--------CGCGAC-GGGUUC- -5'
16139 5' -57.6 NC_004065.1 + 153350 0.67 0.89937
Target:  5'- cCCAGgcuGAUCGUCAGGGaCGCcugcggcuuccUGCUCAu- -3'
miRNA:   3'- -GGUU---CUGGCAGUCCC-GCG-----------ACGGGUuc -5'
16139 5' -57.6 NC_004065.1 + 146606 0.67 0.89937
Target:  5'- aUCGGGGCCGUCGGcGGgGCcgUGUCUucGg -3'
miRNA:   3'- -GGUUCUGGCAGUC-CCgCG--ACGGGuuC- -5'
16139 5' -57.6 NC_004065.1 + 229669 0.67 0.89937
Target:  5'- gCAGGugGgCGUCGGGGCGCgcGUCCGc- -3'
miRNA:   3'- gGUUC--UgGCAGUCCCGCGa-CGGGUuc -5'
16139 5' -57.6 NC_004065.1 + 136369 0.67 0.89937
Target:  5'- gCCGAGaaGCCGggaAGGGUGCgggGaUCCGAGg -3'
miRNA:   3'- -GGUUC--UGGCag-UCCCGCGa--C-GGGUUC- -5'
16139 5' -57.6 NC_004065.1 + 205535 0.67 0.897506
Target:  5'- cUCAGGGCCGgCGGcGGUGCcaucuacgcgcccaUGUCCGAGc -3'
miRNA:   3'- -GGUUCUGGCaGUC-CCGCG--------------ACGGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.