miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1614 3' -55.1 NC_001347.2 + 200344 0.66 0.972044
Target:  5'- gUGGUCUGgcCGCCgGGCUGgaaccUAGUgCugCa -3'
miRNA:   3'- -ACCAGAU--GCGGgUCGAC-----GUCAaGugG- -5'
1614 3' -55.1 NC_001347.2 + 157604 0.66 0.971213
Target:  5'- cGGcUCUAccCGCCCgagcGGCUGCacgcguuguuggacGGUgUCACCg -3'
miRNA:   3'- aCC-AGAU--GCGGG----UCGACG--------------UCA-AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 162614 0.66 0.969206
Target:  5'- -cGUCUAguuuuuUGCUCAGCUGCuGcagCGCCg -3'
miRNA:   3'- acCAGAU------GCGGGUCGACGuCaa-GUGG- -5'
1614 3' -55.1 NC_001347.2 + 38783 0.66 0.968615
Target:  5'- gGGUgCccACGCCCAGCcgguUGCAGcgguacagccgCACCa -3'
miRNA:   3'- aCCA-Ga-UGCGGGUCG----ACGUCaa---------GUGG- -5'
1614 3' -55.1 NC_001347.2 + 151860 0.66 0.968316
Target:  5'- gGGUCUuuuacguucugacgGCGCCCGGUgucCGGacggCGCCg -3'
miRNA:   3'- aCCAGA--------------UGCGGGUCGac-GUCaa--GUGG- -5'
1614 3' -55.1 NC_001347.2 + 136200 0.66 0.966169
Target:  5'- cGGaCUGCGCCggggGGCgGCGGgcaCGCCg -3'
miRNA:   3'- aCCaGAUGCGGg---UCGaCGUCaa-GUGG- -5'
1614 3' -55.1 NC_001347.2 + 22564 0.66 0.959474
Target:  5'- aUGGUCUuuuuCGUUCucuGCaGCGGUcUCACCu -3'
miRNA:   3'- -ACCAGAu---GCGGGu--CGaCGUCA-AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 8314 0.66 0.959474
Target:  5'- gGGUCUguGCGgCCAuCgUGCAGUUCcaagcGCCg -3'
miRNA:   3'- aCCAGA--UGCgGGUcG-ACGUCAAG-----UGG- -5'
1614 3' -55.1 NC_001347.2 + 189838 0.66 0.955806
Target:  5'- aGGUCgacCGCCCucgguccccgugAGCgGUAGcgCGCCg -3'
miRNA:   3'- aCCAGau-GCGGG------------UCGaCGUCaaGUGG- -5'
1614 3' -55.1 NC_001347.2 + 151094 0.66 0.954278
Target:  5'- cGGUCgcgacaugcuagaGCGCaCGGC-GCGGUUCAUCa -3'
miRNA:   3'- aCCAGa------------UGCGgGUCGaCGUCAAGUGG- -5'
1614 3' -55.1 NC_001347.2 + 110706 0.67 0.951919
Target:  5'- cUGGUagACGCCCuGgaGCAGcUgGCCu -3'
miRNA:   3'- -ACCAgaUGCGGGuCgaCGUCaAgUGG- -5'
1614 3' -55.1 NC_001347.2 + 208750 0.67 0.947809
Target:  5'- gGGUCUcguUGCCCAGCacGCAGguguaggUGCCc -3'
miRNA:   3'- aCCAGAu--GCGGGUCGa-CGUCaa-----GUGG- -5'
1614 3' -55.1 NC_001347.2 + 188020 0.67 0.947809
Target:  5'- --cUCU-CGCUCGGCgGCGGUUCgGCCu -3'
miRNA:   3'- accAGAuGCGGGUCGaCGUCAAG-UGG- -5'
1614 3' -55.1 NC_001347.2 + 47208 0.67 0.941675
Target:  5'- aUGGUCUcgccggaGCGCCCGGCUuuuauggaacacucGCguccgguugGGUaUCACCc -3'
miRNA:   3'- -ACCAGA-------UGCGGGUCGA--------------CG---------UCA-AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 38622 0.67 0.938909
Target:  5'- -----cGCGCCCagcaguaccaucGGCUGCAGU-CGCCu -3'
miRNA:   3'- accagaUGCGGG------------UCGACGUCAaGUGG- -5'
1614 3' -55.1 NC_001347.2 + 174446 0.67 0.93844
Target:  5'- cGGUgCUGCGUCuCAGCUGgccaaaCGGUugguucuUCACCu -3'
miRNA:   3'- aCCA-GAUGCGG-GUCGAC------GUCA-------AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 14266 0.67 0.934115
Target:  5'- gGGuUCUG-GCCCugacggcGCUGCAGUUaugcCGCCg -3'
miRNA:   3'- aCC-AGAUgCGGGu------CGACGUCAA----GUGG- -5'
1614 3' -55.1 NC_001347.2 + 38971 0.68 0.929089
Target:  5'- cGGcCUuguCGCCCaccgucgggucGGCUGCGGggucCACCu -3'
miRNA:   3'- aCCaGAu--GCGGG-----------UCGACGUCaa--GUGG- -5'
1614 3' -55.1 NC_001347.2 + 78003 0.68 0.929089
Target:  5'- cUGG-CUuaugaGCGCgacaAGCUGCuGUUCACCa -3'
miRNA:   3'- -ACCaGA-----UGCGgg--UCGACGuCAAGUGG- -5'
1614 3' -55.1 NC_001347.2 + 39341 0.68 0.929089
Target:  5'- aGGg--GCGCCCGGCgGCccgcggGGUUCuACCc -3'
miRNA:   3'- aCCagaUGCGGGUCGaCG------UCAAG-UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.