miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1614 3' -55.1 NC_001347.2 + 147149 1.12 0.003392
Target:  5'- cUGGUCUACGCCCAGCUGCAGUUCACCu -3'
miRNA:   3'- -ACCAGAUGCGGGUCGACGUCAAGUGG- -5'
1614 3' -55.1 NC_001347.2 + 143688 0.77 0.470936
Target:  5'- aGGUCUGCGCgCAGUUGCuGgagcucuccgUCGCCu -3'
miRNA:   3'- aCCAGAUGCGgGUCGACGuCa---------AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 209064 0.75 0.553271
Target:  5'- cGGUC-GCGCaCCGGCUGCAGacagggcgaacgCACCa -3'
miRNA:   3'- aCCAGaUGCG-GGUCGACGUCaa----------GUGG- -5'
1614 3' -55.1 NC_001347.2 + 19734 0.74 0.637356
Target:  5'- aGcGUCUGCGCCUuuugcuGGCUGguGUUgccgCACCg -3'
miRNA:   3'- aC-CAGAUGCGGG------UCGACguCAA----GUGG- -5'
1614 3' -55.1 NC_001347.2 + 23353 0.72 0.73659
Target:  5'- gGGUCUACaGCaCCguGGCcgUGCAGggCACCu -3'
miRNA:   3'- aCCAGAUG-CG-GG--UCG--ACGUCaaGUGG- -5'
1614 3' -55.1 NC_001347.2 + 20319 0.72 0.755657
Target:  5'- cGGUCgcUGCCaCAGCaGCGGcgUCGCCc -3'
miRNA:   3'- aCCAGauGCGG-GUCGaCGUCa-AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 153219 0.71 0.771535
Target:  5'- aGGUCgugcagcgugagGCGCgggcgcgcgucggCCGGCgacgGCGGUUCGCCg -3'
miRNA:   3'- aCCAGa-----------UGCG-------------GGUCGa---CGUCAAGUGG- -5'
1614 3' -55.1 NC_001347.2 + 27174 0.71 0.801324
Target:  5'- gGGUCUACGCCCuAGUgGUcuUUCACa -3'
miRNA:   3'- aCCAGAUGCGGG-UCGaCGucAAGUGg -5'
1614 3' -55.1 NC_001347.2 + 10207 0.7 0.81861
Target:  5'- aGG-CaGCGUCCGGUUuggucuauaugaGCGGUUCACCa -3'
miRNA:   3'- aCCaGaUGCGGGUCGA------------CGUCAAGUGG- -5'
1614 3' -55.1 NC_001347.2 + 162025 0.7 0.827011
Target:  5'- aGGuUCUGCGCCgugcuCAGCUGCucgUCGCg -3'
miRNA:   3'- aCC-AGAUGCGG-----GUCGACGucaAGUGg -5'
1614 3' -55.1 NC_001347.2 + 39069 0.7 0.834424
Target:  5'- aGGUCcgucGCGCCCacgccguucaucuGGCUGCGcGgcgUCACCc -3'
miRNA:   3'- aCCAGa---UGCGGG-------------UCGACGU-Ca--AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 115520 0.7 0.835239
Target:  5'- cGG-CcGCGCUagcgGGCUGCAGUaCACCg -3'
miRNA:   3'- aCCaGaUGCGGg---UCGACGUCAaGUGG- -5'
1614 3' -55.1 NC_001347.2 + 59819 0.7 0.843289
Target:  5'- aGGcCUACGCCguGggGCAGUUugagcagccCACCg -3'
miRNA:   3'- aCCaGAUGCGGguCgaCGUCAA---------GUGG- -5'
1614 3' -55.1 NC_001347.2 + 150164 0.69 0.869228
Target:  5'- aGGgCcGCGCCCAGguaggccguuacuguCUGCAGgaCGCCg -3'
miRNA:   3'- aCCaGaUGCGGGUC---------------GACGUCaaGUGG- -5'
1614 3' -55.1 NC_001347.2 + 64962 0.69 0.880622
Target:  5'- uUGG-CUGCGCCC-GUUGguGaaugUUACCa -3'
miRNA:   3'- -ACCaGAUGCGGGuCGACguCa---AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 107064 0.69 0.894091
Target:  5'- cGGaUCUGaCGCCCAcGCUGaCGGUgCGCg -3'
miRNA:   3'- aCC-AGAU-GCGGGU-CGAC-GUCAaGUGg -5'
1614 3' -55.1 NC_001347.2 + 224665 0.69 0.894091
Target:  5'- cGGUUU-CGCUgUAGCUGUGGUUCaACCu -3'
miRNA:   3'- aCCAGAuGCGG-GUCGACGUCAAG-UGG- -5'
1614 3' -55.1 NC_001347.2 + 4721 0.68 0.900494
Target:  5'- cUGGUCccagaAgGUCCAGCUGCAGa-UACCc -3'
miRNA:   3'- -ACCAGa----UgCGGGUCGACGUCaaGUGG- -5'
1614 3' -55.1 NC_001347.2 + 93691 0.68 0.918343
Target:  5'- aGGUCUggauuuACGUCCAgGC-GCAGcugCACCa -3'
miRNA:   3'- aCCAGA------UGCGGGU-CGaCGUCaa-GUGG- -5'
1614 3' -55.1 NC_001347.2 + 76855 0.68 0.918343
Target:  5'- aUGGUCUugaccuGCGCCgAGCgagUGCGGUugaggaUCGCg -3'
miRNA:   3'- -ACCAGA------UGCGGgUCG---ACGUCA------AGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.