miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1614 3' -55.1 NC_001347.2 + 4721 0.68 0.900494
Target:  5'- cUGGUCccagaAgGUCCAGCUGCAGa-UACCc -3'
miRNA:   3'- -ACCAGa----UgCGGGUCGACGUCaaGUGG- -5'
1614 3' -55.1 NC_001347.2 + 8314 0.66 0.959474
Target:  5'- gGGUCUguGCGgCCAuCgUGCAGUUCcaagcGCCg -3'
miRNA:   3'- aCCAGA--UGCgGGUcG-ACGUCAAG-----UGG- -5'
1614 3' -55.1 NC_001347.2 + 10207 0.7 0.81861
Target:  5'- aGG-CaGCGUCCGGUUuggucuauaugaGCGGUUCACCa -3'
miRNA:   3'- aCCaGaUGCGGGUCGA------------CGUCAAGUGG- -5'
1614 3' -55.1 NC_001347.2 + 14266 0.67 0.934115
Target:  5'- gGGuUCUG-GCCCugacggcGCUGCAGUUaugcCGCCg -3'
miRNA:   3'- aCC-AGAUgCGGGu------CGACGUCAA----GUGG- -5'
1614 3' -55.1 NC_001347.2 + 19734 0.74 0.637356
Target:  5'- aGcGUCUGCGCCUuuugcuGGCUGguGUUgccgCACCg -3'
miRNA:   3'- aC-CAGAUGCGGG------UCGACguCAA----GUGG- -5'
1614 3' -55.1 NC_001347.2 + 20319 0.72 0.755657
Target:  5'- cGGUCgcUGCCaCAGCaGCGGcgUCGCCc -3'
miRNA:   3'- aCCAGauGCGG-GUCGaCGUCa-AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 22564 0.66 0.959474
Target:  5'- aUGGUCUuuuuCGUUCucuGCaGCGGUcUCACCu -3'
miRNA:   3'- -ACCAGAu---GCGGGu--CGaCGUCA-AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 23353 0.72 0.73659
Target:  5'- gGGUCUACaGCaCCguGGCcgUGCAGggCACCu -3'
miRNA:   3'- aCCAGAUG-CG-GG--UCG--ACGUCaaGUGG- -5'
1614 3' -55.1 NC_001347.2 + 27174 0.71 0.801324
Target:  5'- gGGUCUACGCCCuAGUgGUcuUUCACa -3'
miRNA:   3'- aCCAGAUGCGGG-UCGaCGucAAGUGg -5'
1614 3' -55.1 NC_001347.2 + 38622 0.67 0.938909
Target:  5'- -----cGCGCCCagcaguaccaucGGCUGCAGU-CGCCu -3'
miRNA:   3'- accagaUGCGGG------------UCGACGUCAaGUGG- -5'
1614 3' -55.1 NC_001347.2 + 38783 0.66 0.968615
Target:  5'- gGGUgCccACGCCCAGCcgguUGCAGcgguacagccgCACCa -3'
miRNA:   3'- aCCA-Ga-UGCGGGUCG----ACGUCaa---------GUGG- -5'
1614 3' -55.1 NC_001347.2 + 38971 0.68 0.929089
Target:  5'- cGGcCUuguCGCCCaccgucgggucGGCUGCGGggucCACCu -3'
miRNA:   3'- aCCaGAu--GCGGG-----------UCGACGUCaa--GUGG- -5'
1614 3' -55.1 NC_001347.2 + 39069 0.7 0.834424
Target:  5'- aGGUCcgucGCGCCCacgccguucaucuGGCUGCGcGgcgUCACCc -3'
miRNA:   3'- aCCAGa---UGCGGG-------------UCGACGU-Ca--AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 39341 0.68 0.929089
Target:  5'- aGGg--GCGCCCGGCgGCccgcggGGUUCuACCc -3'
miRNA:   3'- aCCagaUGCGGGUCGaCG------UCAAG-UGG- -5'
1614 3' -55.1 NC_001347.2 + 47208 0.67 0.941675
Target:  5'- aUGGUCUcgccggaGCGCCCGGCUuuuauggaacacucGCguccgguugGGUaUCACCc -3'
miRNA:   3'- -ACCAGA-------UGCGGGUCGA--------------CG---------UCA-AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 59819 0.7 0.843289
Target:  5'- aGGcCUACGCCguGggGCAGUUugagcagccCACCg -3'
miRNA:   3'- aCCaGAUGCGGguCgaCGUCAA---------GUGG- -5'
1614 3' -55.1 NC_001347.2 + 64962 0.69 0.880622
Target:  5'- uUGG-CUGCGCCC-GUUGguGaaugUUACCa -3'
miRNA:   3'- -ACCaGAUGCGGGuCGACguCa---AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 76855 0.68 0.918343
Target:  5'- aUGGUCUugaccuGCGCCgAGCgagUGCGGUugaggaUCGCg -3'
miRNA:   3'- -ACCAGA------UGCGGgUCG---ACGUCA------AGUGg -5'
1614 3' -55.1 NC_001347.2 + 78003 0.68 0.929089
Target:  5'- cUGG-CUuaugaGCGCgacaAGCUGCuGUUCACCa -3'
miRNA:   3'- -ACCaGA-----UGCGgg--UCGACGuCAAGUGG- -5'
1614 3' -55.1 NC_001347.2 + 93691 0.68 0.918343
Target:  5'- aGGUCUggauuuACGUCCAgGC-GCAGcugCACCa -3'
miRNA:   3'- aCCAGA------UGCGGGU-CGaCGUCaa-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.