Results 21 - 40 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 107064 | 0.69 | 0.894091 |
Target: 5'- cGGaUCUGaCGCCCAcGCUGaCGGUgCGCg -3' miRNA: 3'- aCC-AGAU-GCGGGU-CGAC-GUCAaGUGg -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 110706 | 0.67 | 0.951919 |
Target: 5'- cUGGUagACGCCCuGgaGCAGcUgGCCu -3' miRNA: 3'- -ACCAgaUGCGGGuCgaCGUCaAgUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 115520 | 0.7 | 0.835239 |
Target: 5'- cGG-CcGCGCUagcgGGCUGCAGUaCACCg -3' miRNA: 3'- aCCaGaUGCGGg---UCGACGUCAaGUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 136200 | 0.66 | 0.966169 |
Target: 5'- cGGaCUGCGCCggggGGCgGCGGgcaCGCCg -3' miRNA: 3'- aCCaGAUGCGGg---UCGaCGUCaa-GUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 143688 | 0.77 | 0.470936 |
Target: 5'- aGGUCUGCGCgCAGUUGCuGgagcucuccgUCGCCu -3' miRNA: 3'- aCCAGAUGCGgGUCGACGuCa---------AGUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 147149 | 1.12 | 0.003392 |
Target: 5'- cUGGUCUACGCCCAGCUGCAGUUCACCu -3' miRNA: 3'- -ACCAGAUGCGGGUCGACGUCAAGUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 150164 | 0.69 | 0.869228 |
Target: 5'- aGGgCcGCGCCCAGguaggccguuacuguCUGCAGgaCGCCg -3' miRNA: 3'- aCCaGaUGCGGGUC---------------GACGUCaaGUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 151094 | 0.66 | 0.954278 |
Target: 5'- cGGUCgcgacaugcuagaGCGCaCGGC-GCGGUUCAUCa -3' miRNA: 3'- aCCAGa------------UGCGgGUCGaCGUCAAGUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 151860 | 0.66 | 0.968316 |
Target: 5'- gGGUCUuuuacguucugacgGCGCCCGGUgucCGGacggCGCCg -3' miRNA: 3'- aCCAGA--------------UGCGGGUCGac-GUCaa--GUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 153219 | 0.71 | 0.771535 |
Target: 5'- aGGUCgugcagcgugagGCGCgggcgcgcgucggCCGGCgacgGCGGUUCGCCg -3' miRNA: 3'- aCCAGa-----------UGCG-------------GGUCGa---CGUCAAGUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 157604 | 0.66 | 0.971213 |
Target: 5'- cGGcUCUAccCGCCCgagcGGCUGCacgcguuguuggacGGUgUCACCg -3' miRNA: 3'- aCC-AGAU--GCGGG----UCGACG--------------UCA-AGUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 162025 | 0.7 | 0.827011 |
Target: 5'- aGGuUCUGCGCCgugcuCAGCUGCucgUCGCg -3' miRNA: 3'- aCC-AGAUGCGG-----GUCGACGucaAGUGg -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 162614 | 0.66 | 0.969206 |
Target: 5'- -cGUCUAguuuuuUGCUCAGCUGCuGcagCGCCg -3' miRNA: 3'- acCAGAU------GCGGGUCGACGuCaa-GUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 174446 | 0.67 | 0.93844 |
Target: 5'- cGGUgCUGCGUCuCAGCUGgccaaaCGGUugguucuUCACCu -3' miRNA: 3'- aCCA-GAUGCGG-GUCGAC------GUCA-------AGUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 188020 | 0.67 | 0.947809 |
Target: 5'- --cUCU-CGCUCGGCgGCGGUUCgGCCu -3' miRNA: 3'- accAGAuGCGGGUCGaCGUCAAG-UGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 189838 | 0.66 | 0.955806 |
Target: 5'- aGGUCgacCGCCCucgguccccgugAGCgGUAGcgCGCCg -3' miRNA: 3'- aCCAGau-GCGGG------------UCGaCGUCaaGUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 200344 | 0.66 | 0.972044 |
Target: 5'- gUGGUCUGgcCGCCgGGCUGgaaccUAGUgCugCa -3' miRNA: 3'- -ACCAGAU--GCGGgUCGAC-----GUCAaGugG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 208750 | 0.67 | 0.947809 |
Target: 5'- gGGUCUcguUGCCCAGCacGCAGguguaggUGCCc -3' miRNA: 3'- aCCAGAu--GCGGGUCGa-CGUCaa-----GUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 209064 | 0.75 | 0.553271 |
Target: 5'- cGGUC-GCGCaCCGGCUGCAGacagggcgaacgCACCa -3' miRNA: 3'- aCCAGaUGCG-GGUCGACGUCaa----------GUGG- -5' |
|||||||
1614 | 3' | -55.1 | NC_001347.2 | + | 222813 | 0.68 | 0.923832 |
Target: 5'- -uGUCUucgcCGCCgCAGCUGUAGcaguuaacgUCGCCg -3' miRNA: 3'- acCAGAu---GCGG-GUCGACGUCa--------AGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home