miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1614 3' -55.1 NC_001347.2 + 224665 0.69 0.894091
Target:  5'- cGGUUU-CGCUgUAGCUGUGGUUCaACCu -3'
miRNA:   3'- aCCAGAuGCGG-GUCGACGUCAAG-UGG- -5'
1614 3' -55.1 NC_001347.2 + 222813 0.68 0.923832
Target:  5'- -uGUCUucgcCGCCgCAGCUGUAGcaguuaacgUCGCCg -3'
miRNA:   3'- acCAGAu---GCGG-GUCGACGUCa--------AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 209064 0.75 0.553271
Target:  5'- cGGUC-GCGCaCCGGCUGCAGacagggcgaacgCACCa -3'
miRNA:   3'- aCCAGaUGCG-GGUCGACGUCaa----------GUGG- -5'
1614 3' -55.1 NC_001347.2 + 208750 0.67 0.947809
Target:  5'- gGGUCUcguUGCCCAGCacGCAGguguaggUGCCc -3'
miRNA:   3'- aCCAGAu--GCGGGUCGa-CGUCaa-----GUGG- -5'
1614 3' -55.1 NC_001347.2 + 200344 0.66 0.972044
Target:  5'- gUGGUCUGgcCGCCgGGCUGgaaccUAGUgCugCa -3'
miRNA:   3'- -ACCAGAU--GCGGgUCGAC-----GUCAaGugG- -5'
1614 3' -55.1 NC_001347.2 + 189838 0.66 0.955806
Target:  5'- aGGUCgacCGCCCucgguccccgugAGCgGUAGcgCGCCg -3'
miRNA:   3'- aCCAGau-GCGGG------------UCGaCGUCaaGUGG- -5'
1614 3' -55.1 NC_001347.2 + 188020 0.67 0.947809
Target:  5'- --cUCU-CGCUCGGCgGCGGUUCgGCCu -3'
miRNA:   3'- accAGAuGCGGGUCGaCGUCAAG-UGG- -5'
1614 3' -55.1 NC_001347.2 + 174446 0.67 0.93844
Target:  5'- cGGUgCUGCGUCuCAGCUGgccaaaCGGUugguucuUCACCu -3'
miRNA:   3'- aCCA-GAUGCGG-GUCGAC------GUCA-------AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 162614 0.66 0.969206
Target:  5'- -cGUCUAguuuuuUGCUCAGCUGCuGcagCGCCg -3'
miRNA:   3'- acCAGAU------GCGGGUCGACGuCaa-GUGG- -5'
1614 3' -55.1 NC_001347.2 + 162025 0.7 0.827011
Target:  5'- aGGuUCUGCGCCgugcuCAGCUGCucgUCGCg -3'
miRNA:   3'- aCC-AGAUGCGG-----GUCGACGucaAGUGg -5'
1614 3' -55.1 NC_001347.2 + 157604 0.66 0.971213
Target:  5'- cGGcUCUAccCGCCCgagcGGCUGCacgcguuguuggacGGUgUCACCg -3'
miRNA:   3'- aCC-AGAU--GCGGG----UCGACG--------------UCA-AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 153219 0.71 0.771535
Target:  5'- aGGUCgugcagcgugagGCGCgggcgcgcgucggCCGGCgacgGCGGUUCGCCg -3'
miRNA:   3'- aCCAGa-----------UGCG-------------GGUCGa---CGUCAAGUGG- -5'
1614 3' -55.1 NC_001347.2 + 151860 0.66 0.968316
Target:  5'- gGGUCUuuuacguucugacgGCGCCCGGUgucCGGacggCGCCg -3'
miRNA:   3'- aCCAGA--------------UGCGGGUCGac-GUCaa--GUGG- -5'
1614 3' -55.1 NC_001347.2 + 151094 0.66 0.954278
Target:  5'- cGGUCgcgacaugcuagaGCGCaCGGC-GCGGUUCAUCa -3'
miRNA:   3'- aCCAGa------------UGCGgGUCGaCGUCAAGUGG- -5'
1614 3' -55.1 NC_001347.2 + 150164 0.69 0.869228
Target:  5'- aGGgCcGCGCCCAGguaggccguuacuguCUGCAGgaCGCCg -3'
miRNA:   3'- aCCaGaUGCGGGUC---------------GACGUCaaGUGG- -5'
1614 3' -55.1 NC_001347.2 + 147149 1.12 0.003392
Target:  5'- cUGGUCUACGCCCAGCUGCAGUUCACCu -3'
miRNA:   3'- -ACCAGAUGCGGGUCGACGUCAAGUGG- -5'
1614 3' -55.1 NC_001347.2 + 143688 0.77 0.470936
Target:  5'- aGGUCUGCGCgCAGUUGCuGgagcucuccgUCGCCu -3'
miRNA:   3'- aCCAGAUGCGgGUCGACGuCa---------AGUGG- -5'
1614 3' -55.1 NC_001347.2 + 136200 0.66 0.966169
Target:  5'- cGGaCUGCGCCggggGGCgGCGGgcaCGCCg -3'
miRNA:   3'- aCCaGAUGCGGg---UCGaCGUCaa-GUGG- -5'
1614 3' -55.1 NC_001347.2 + 115520 0.7 0.835239
Target:  5'- cGG-CcGCGCUagcgGGCUGCAGUaCACCg -3'
miRNA:   3'- aCCaGaUGCGGg---UCGACGUCAaGUGG- -5'
1614 3' -55.1 NC_001347.2 + 110706 0.67 0.951919
Target:  5'- cUGGUagACGCCCuGgaGCAGcUgGCCu -3'
miRNA:   3'- -ACCAgaUGCGGGuCgaCGUCaAgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.