Results 1 - 20 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1614 | 5' | -56 | NC_001347.2 | + | 55358 | 0.66 | 0.965249 |
Target: 5'- uGCGGUuuuggcagUACAUCAA-UGGGCGUggauaGCGg -3' miRNA: 3'- -CGCCA--------AUGUAGUUgGCCCGCGac---CGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 142566 | 0.66 | 0.965249 |
Target: 5'- gGCuGGcgGCGUCGGCgGGaGCaGCgggGGCGg -3' miRNA: 3'- -CG-CCaaUGUAGUUGgCC-CG-CGa--CCGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 9181 | 0.66 | 0.964934 |
Target: 5'- uGUGGUaccaggaUACAUCG--CGGGaaaagaguCGCUGGCGa -3' miRNA: 3'- -CGCCA-------AUGUAGUugGCCC--------GCGACCGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 144578 | 0.66 | 0.964934 |
Target: 5'- aCGGUgGCggCGGCCGGGCucguggaGgaGGCa -3' miRNA: 3'- cGCCAaUGuaGUUGGCCCG-------CgaCCGc -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 1735 | 0.66 | 0.964296 |
Target: 5'- gGCGGUgggccgGCA-CGACgGuGGCGCUgcagacgccgggcaGGCGa -3' miRNA: 3'- -CGCCAa-----UGUaGUUGgC-CCGCGA--------------CCGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 184967 | 0.66 | 0.962002 |
Target: 5'- gGCGGcucGCGgaGACUGGGCuGCaGGCGg -3' miRNA: 3'- -CGCCaa-UGUagUUGGCCCG-CGaCCGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 59041 | 0.66 | 0.958549 |
Target: 5'- gGCGGaggaGCAUCcguGACCucgagccaccauGGGCGC-GGCGg -3' miRNA: 3'- -CGCCaa--UGUAG---UUGG------------CCCGCGaCCGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 1604 | 0.66 | 0.954509 |
Target: 5'- gGUGGUgcggcuguaccgcUGCAacCGGCUGGGCGUgGGCa -3' miRNA: 3'- -CGCCA-------------AUGUa-GUUGGCCCGCGaCCGc -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 48249 | 0.67 | 0.942611 |
Target: 5'- gGCGcaUAC-UCGGCCugGGGCGCgGGCu -3' miRNA: 3'- -CGCcaAUGuAGUUGG--CCCGCGaCCGc -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 75847 | 0.67 | 0.938079 |
Target: 5'- uGUGGcaacgACGUCGGCCgcgGGGCGCagcgccuccuUGGUGa -3' miRNA: 3'- -CGCCaa---UGUAGUUGG---CCCGCG----------ACCGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 142 | 0.67 | 0.938079 |
Target: 5'- cGCGG--GCGUguGCCGGGUGUgucgugccgGGUGu -3' miRNA: 3'- -CGCCaaUGUAguUGGCCCGCGa--------CCGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 191782 | 0.67 | 0.938079 |
Target: 5'- uGUGGcgGCA-CAGCCGcaGGCGCUcugccaguuGGCGa -3' miRNA: 3'- -CGCCaaUGUaGUUGGC--CCGCGA---------CCGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 229621 | 0.67 | 0.938079 |
Target: 5'- cGCGG--GCGUguGCCGGGUGUgucgugccgGGUGu -3' miRNA: 3'- -CGCCaaUGUAguUGGCCCGCGa--------CCGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 229668 | 0.67 | 0.933324 |
Target: 5'- gGCGGgugUGC--CGGCgGGGUGUggUGGCGg -3' miRNA: 3'- -CGCCa--AUGuaGUUGgCCCGCG--ACCGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 189 | 0.67 | 0.933324 |
Target: 5'- gGCGGgugUGC--CGGCgGGGUGUggUGGCGg -3' miRNA: 3'- -CGCCa--AUGuaGUUGgCCCGCG--ACCGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 8603 | 0.67 | 0.928346 |
Target: 5'- -gGGUgccCGUCAcGCa-GGCGCUGGCGu -3' miRNA: 3'- cgCCAau-GUAGU-UGgcCCGCGACCGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 75404 | 0.67 | 0.928346 |
Target: 5'- aGCGGgaGCggCGGCCGuGGCgGC-GGCa -3' miRNA: 3'- -CGCCaaUGuaGUUGGC-CCG-CGaCCGc -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 193966 | 0.67 | 0.927836 |
Target: 5'- uGCGGcgACA-CGggcACCGuguacgcGGCGCUGGUGg -3' miRNA: 3'- -CGCCaaUGUaGU---UGGC-------CCGCGACCGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 30597 | 0.67 | 0.923143 |
Target: 5'- gGCGGcuuccUGCGgcCGGCCGcGGUGCcGGCGg -3' miRNA: 3'- -CGCCa----AUGUa-GUUGGC-CCGCGaCCGC- -5' |
|||||||
1614 | 5' | -56 | NC_001347.2 | + | 182400 | 0.67 | 0.923143 |
Target: 5'- -aGGUgUACGUgGACgCGGGCG-UGGUGg -3' miRNA: 3'- cgCCA-AUGUAgUUG-GCCCGCgACCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home