Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1614 | 5' | -56 | NC_001347.2 | + | 166049 | 0.68 | 0.893786 |
Target: 5'- uCGGUgucggGCGUCAugCGGaGuCGC-GGCGg -3' miRNA: 3'- cGCCAa----UGUAGUugGCC-C-GCGaCCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 191404 | 0.68 | 0.893786 |
Target: 5'- aGCGGUUGCAgCAcCaCGGaGCucucGCUGGUGg -3' miRNA: 3'- -CGCCAAUGUaGUuG-GCC-CG----CGACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 192167 | 0.68 | 0.893786 |
Target: 5'- cGCGGUUuccgcCGUCuccggaugagcGGCCGcGGCGCgGGCu -3' miRNA: 3'- -CGCCAAu----GUAG-----------UUGGC-CCGCGaCCGc -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 31394 | 0.68 | 0.894427 |
Target: 5'- gGCGGUggcugcgccuccuCGUCGGCCuGGGCugcuguuggguaacGCUGGCu -3' miRNA: 3'- -CGCCAau-----------GUAGUUGG-CCCG--------------CGACCGc -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 142116 | 0.68 | 0.899476 |
Target: 5'- cGCGGaUcuuauaaaaaaccGCGUCAugCuGGCGCUGGaCGc -3' miRNA: 3'- -CGCCaA-------------UGUAGUugGcCCGCGACC-GC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 92365 | 0.68 | 0.906191 |
Target: 5'- uCGGgacgcgGCAgCAACCaGGCGCcGGCGc -3' miRNA: 3'- cGCCaa----UGUaGUUGGcCCGCGaCCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 76621 | 0.68 | 0.917715 |
Target: 5'- gGCGGcgGCugCGGCCGcGGCGgaGGCc -3' miRNA: 3'- -CGCCaaUGuaGUUGGC-CCGCgaCCGc -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 126608 | 0.68 | 0.917715 |
Target: 5'- aCGGUcugcgugcacUACGUCuaccuggccuACCGcacGGCGCUGGCa -3' miRNA: 3'- cGCCA----------AUGUAGu---------UGGC---CCGCGACCGc -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 209056 | 0.68 | 0.917715 |
Target: 5'- cGCGGUUGCgGUCGcgcACCGGcUGCagacagGGCGa -3' miRNA: 3'- -CGCCAAUG-UAGU---UGGCCcGCGa-----CCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 110849 | 0.69 | 0.859084 |
Target: 5'- uCGGUUuacacGCAUCGcGCCGaGGUGgUGGCGc -3' miRNA: 3'- cGCCAA-----UGUAGU-UGGC-CCGCgACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 153237 | 0.69 | 0.86643 |
Target: 5'- cGCGGgcgcGCGUCGGCC-GGCGaC-GGCGg -3' miRNA: 3'- -CGCCaa--UGUAGUUGGcCCGC-GaCCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 140691 | 0.69 | 0.873578 |
Target: 5'- gGCGGUcGCAU--GuuGGGCGCUaGCGu -3' miRNA: 3'- -CGCCAaUGUAguUggCCCGCGAcCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 2353 | 0.7 | 0.802625 |
Target: 5'- cGCGG--GCGU--GCUGGGCGCgcUGGCGc -3' miRNA: 3'- -CGCCaaUGUAguUGGCCCGCG--ACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 41160 | 0.7 | 0.802625 |
Target: 5'- cGCGGaa--AUCcGCCGcGGCGgUGGCGa -3' miRNA: 3'- -CGCCaaugUAGuUGGC-CCGCgACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 51208 | 0.7 | 0.809484 |
Target: 5'- cGCGGcgUACGUCaccgcgcuauuauccAccauccgaagcuacaGCCGGGCGUUGGCc -3' miRNA: 3'- -CGCCa-AUGUAG---------------U---------------UGGCCCGCGACCGc -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 37036 | 0.7 | 0.81959 |
Target: 5'- gGCGuGUguuugACAuuuuuUCGGCCGcggaGGUGCUGGCGg -3' miRNA: 3'- -CGC-CAa----UGU-----AGUUGGC----CCGCGACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 37147 | 0.7 | 0.843821 |
Target: 5'- cGCGGUUcUAUCcccgaauUUGGGCGgUGGCGg -3' miRNA: 3'- -CGCCAAuGUAGuu-----GGCCCGCgACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 44031 | 0.7 | 0.843821 |
Target: 5'- cGCGGUggcgACggCAGCgGugguGGCGCUGGgGg -3' miRNA: 3'- -CGCCAa---UGuaGUUGgC----CCGCGACCgC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 93190 | 0.71 | 0.776111 |
Target: 5'- uGCGGUUugGgc-GCCGagcgcucGCGCUGGCGa -3' miRNA: 3'- -CGCCAAugUaguUGGCc------CGCGACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 66833 | 0.72 | 0.729616 |
Target: 5'- -aGaGUUACuggCAGCCGcGGCGgUGGCGa -3' miRNA: 3'- cgC-CAAUGua-GUUGGC-CCGCgACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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