Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1614 | 5' | -56 | NC_001347.2 | + | 147188 | 1.1 | 0.003972 |
Target: 5'- cGCGGUUACAUCAACCGGGCGCUGGCGc -3' miRNA: 3'- -CGCCAAUGUAGUUGGCCCGCGACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 67984 | 0.78 | 0.410667 |
Target: 5'- cCGGUU-CAUCAACCGGGgaucccgcagcagucCGUUGGCGg -3' miRNA: 3'- cGCCAAuGUAGUUGGCCC---------------GCGACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 26041 | 0.75 | 0.582283 |
Target: 5'- uGCGGaUACG-CcGCCGGGCGCUG-CGg -3' miRNA: 3'- -CGCCaAUGUaGuUGGCCCGCGACcGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 83901 | 0.74 | 0.611892 |
Target: 5'- cGCGGUagcgGCAgugUCAaguACCaGGCGCUGGCc -3' miRNA: 3'- -CGCCAa---UGU---AGU---UGGcCCGCGACCGc -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 197284 | 0.73 | 0.661429 |
Target: 5'- cGUGGgguCAUCGACCGacaaGGCGC-GGCGa -3' miRNA: 3'- -CGCCaauGUAGUUGGC----CCGCGaCCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 222660 | 0.73 | 0.641628 |
Target: 5'- cGCGaGUguucCAUaaaAGCCGGGCGCUccGGCGa -3' miRNA: 3'- -CGC-CAau--GUAg--UUGGCCCGCGA--CCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 126660 | 0.73 | 0.641628 |
Target: 5'- cGCGGUUGC-UCGaguACCGGcGCGUggUGGCu -3' miRNA: 3'- -CGCCAAUGuAGU---UGGCC-CGCG--ACCGc -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 66833 | 0.72 | 0.729616 |
Target: 5'- -aGaGUUACuggCAGCCGcGGCGgUGGCGa -3' miRNA: 3'- cgC-CAAUGua-GUUGGC-CCGCgACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 190136 | 0.72 | 0.720045 |
Target: 5'- aGCGGUacgggGCcgCAACCGGGUucuGCcGGCa -3' miRNA: 3'- -CGCCAa----UGuaGUUGGCCCG---CGaCCGc -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 93190 | 0.71 | 0.776111 |
Target: 5'- uGCGGUUugGgc-GCCGagcgcucGCGCUGGCGa -3' miRNA: 3'- -CGCCAAugUaguUGGCc------CGCGACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 51208 | 0.7 | 0.809484 |
Target: 5'- cGCGGcgUACGUCaccgcgcuauuauccAccauccgaagcuacaGCCGGGCGUUGGCc -3' miRNA: 3'- -CGCCa-AUGUAG---------------U---------------UGGCCCGCGACCGc -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 37036 | 0.7 | 0.81959 |
Target: 5'- gGCGuGUguuugACAuuuuuUCGGCCGcggaGGUGCUGGCGg -3' miRNA: 3'- -CGC-CAa----UGU-----AGUUGGC----CCGCGACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 37147 | 0.7 | 0.843821 |
Target: 5'- cGCGGUUcUAUCcccgaauUUGGGCGgUGGCGg -3' miRNA: 3'- -CGCCAAuGUAGuu-----GGCCCGCgACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 41160 | 0.7 | 0.802625 |
Target: 5'- cGCGGaa--AUCcGCCGcGGCGgUGGCGa -3' miRNA: 3'- -CGCCaaugUAGuUGGC-CCGCgACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 2353 | 0.7 | 0.802625 |
Target: 5'- cGCGG--GCGU--GCUGGGCGCgcUGGCGc -3' miRNA: 3'- -CGCCaaUGUAguUGGCCCGCG--ACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 44031 | 0.7 | 0.843821 |
Target: 5'- cGCGGUggcgACggCAGCgGugguGGCGCUGGgGg -3' miRNA: 3'- -CGCCAa---UGuaGUUGgC----CCGCGACCgC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 153237 | 0.69 | 0.86643 |
Target: 5'- cGCGGgcgcGCGUCGGCC-GGCGaC-GGCGg -3' miRNA: 3'- -CGCCaa--UGUAGUUGGcCCGC-GaCCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 110849 | 0.69 | 0.859084 |
Target: 5'- uCGGUUuacacGCAUCGcGCCGaGGUGgUGGCGc -3' miRNA: 3'- cGCCAA-----UGUAGU-UGGC-CCGCgACCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 140691 | 0.69 | 0.873578 |
Target: 5'- gGCGGUcGCAU--GuuGGGCGCUaGCGu -3' miRNA: 3'- -CGCCAaUGUAguUggCCCGCGAcCGC- -5' |
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1614 | 5' | -56 | NC_001347.2 | + | 192167 | 0.68 | 0.893786 |
Target: 5'- cGCGGUUuccgcCGUCuccggaugagcGGCCGcGGCGCgGGCu -3' miRNA: 3'- -CGCCAAu----GUAG-----------UUGGC-CCGCGaCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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