miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1614 5' -56 NC_001347.2 + 147188 1.1 0.003972
Target:  5'- cGCGGUUACAUCAACCGGGCGCUGGCGc -3'
miRNA:   3'- -CGCCAAUGUAGUUGGCCCGCGACCGC- -5'
1614 5' -56 NC_001347.2 + 67984 0.78 0.410667
Target:  5'- cCGGUU-CAUCAACCGGGgaucccgcagcagucCGUUGGCGg -3'
miRNA:   3'- cGCCAAuGUAGUUGGCCC---------------GCGACCGC- -5'
1614 5' -56 NC_001347.2 + 26041 0.75 0.582283
Target:  5'- uGCGGaUACG-CcGCCGGGCGCUG-CGg -3'
miRNA:   3'- -CGCCaAUGUaGuUGGCCCGCGACcGC- -5'
1614 5' -56 NC_001347.2 + 83901 0.74 0.611892
Target:  5'- cGCGGUagcgGCAgugUCAaguACCaGGCGCUGGCc -3'
miRNA:   3'- -CGCCAa---UGU---AGU---UGGcCCGCGACCGc -5'
1614 5' -56 NC_001347.2 + 126660 0.73 0.641628
Target:  5'- cGCGGUUGC-UCGaguACCGGcGCGUggUGGCu -3'
miRNA:   3'- -CGCCAAUGuAGU---UGGCC-CGCG--ACCGc -5'
1614 5' -56 NC_001347.2 + 222660 0.73 0.641628
Target:  5'- cGCGaGUguucCAUaaaAGCCGGGCGCUccGGCGa -3'
miRNA:   3'- -CGC-CAau--GUAg--UUGGCCCGCGA--CCGC- -5'
1614 5' -56 NC_001347.2 + 197284 0.73 0.661429
Target:  5'- cGUGGgguCAUCGACCGacaaGGCGC-GGCGa -3'
miRNA:   3'- -CGCCaauGUAGUUGGC----CCGCGaCCGC- -5'
1614 5' -56 NC_001347.2 + 190136 0.72 0.720045
Target:  5'- aGCGGUacgggGCcgCAACCGGGUucuGCcGGCa -3'
miRNA:   3'- -CGCCAa----UGuaGUUGGCCCG---CGaCCGc -5'
1614 5' -56 NC_001347.2 + 66833 0.72 0.729616
Target:  5'- -aGaGUUACuggCAGCCGcGGCGgUGGCGa -3'
miRNA:   3'- cgC-CAAUGua-GUUGGC-CCGCgACCGC- -5'
1614 5' -56 NC_001347.2 + 93190 0.71 0.776111
Target:  5'- uGCGGUUugGgc-GCCGagcgcucGCGCUGGCGa -3'
miRNA:   3'- -CGCCAAugUaguUGGCc------CGCGACCGC- -5'
1614 5' -56 NC_001347.2 + 41160 0.7 0.802625
Target:  5'- cGCGGaa--AUCcGCCGcGGCGgUGGCGa -3'
miRNA:   3'- -CGCCaaugUAGuUGGC-CCGCgACCGC- -5'
1614 5' -56 NC_001347.2 + 2353 0.7 0.802625
Target:  5'- cGCGG--GCGU--GCUGGGCGCgcUGGCGc -3'
miRNA:   3'- -CGCCaaUGUAguUGGCCCGCG--ACCGC- -5'
1614 5' -56 NC_001347.2 + 51208 0.7 0.809484
Target:  5'- cGCGGcgUACGUCaccgcgcuauuauccAccauccgaagcuacaGCCGGGCGUUGGCc -3'
miRNA:   3'- -CGCCa-AUGUAG---------------U---------------UGGCCCGCGACCGc -5'
1614 5' -56 NC_001347.2 + 37036 0.7 0.81959
Target:  5'- gGCGuGUguuugACAuuuuuUCGGCCGcggaGGUGCUGGCGg -3'
miRNA:   3'- -CGC-CAa----UGU-----AGUUGGC----CCGCGACCGC- -5'
1614 5' -56 NC_001347.2 + 37147 0.7 0.843821
Target:  5'- cGCGGUUcUAUCcccgaauUUGGGCGgUGGCGg -3'
miRNA:   3'- -CGCCAAuGUAGuu-----GGCCCGCgACCGC- -5'
1614 5' -56 NC_001347.2 + 44031 0.7 0.843821
Target:  5'- cGCGGUggcgACggCAGCgGugguGGCGCUGGgGg -3'
miRNA:   3'- -CGCCAa---UGuaGUUGgC----CCGCGACCgC- -5'
1614 5' -56 NC_001347.2 + 110849 0.69 0.859084
Target:  5'- uCGGUUuacacGCAUCGcGCCGaGGUGgUGGCGc -3'
miRNA:   3'- cGCCAA-----UGUAGU-UGGC-CCGCgACCGC- -5'
1614 5' -56 NC_001347.2 + 153237 0.69 0.86643
Target:  5'- cGCGGgcgcGCGUCGGCC-GGCGaC-GGCGg -3'
miRNA:   3'- -CGCCaa--UGUAGUUGGcCCGC-GaCCGC- -5'
1614 5' -56 NC_001347.2 + 140691 0.69 0.873578
Target:  5'- gGCGGUcGCAU--GuuGGGCGCUaGCGu -3'
miRNA:   3'- -CGCCAaUGUAguUggCCCGCGAcCGC- -5'
1614 5' -56 NC_001347.2 + 166049 0.68 0.893786
Target:  5'- uCGGUgucggGCGUCAugCGGaGuCGC-GGCGg -3'
miRNA:   3'- cGCCAa----UGUAGUugGCC-C-GCGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.