miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1614 5' -56 NC_001347.2 + 191404 0.68 0.893786
Target:  5'- aGCGGUUGCAgCAcCaCGGaGCucucGCUGGUGg -3'
miRNA:   3'- -CGCCAAUGUaGUuG-GCC-CG----CGACCGC- -5'
1614 5' -56 NC_001347.2 + 192167 0.68 0.893786
Target:  5'- cGCGGUUuccgcCGUCuccggaugagcGGCCGcGGCGCgGGCu -3'
miRNA:   3'- -CGCCAAu----GUAG-----------UUGGC-CCGCGaCCGc -5'
1614 5' -56 NC_001347.2 + 31394 0.68 0.894427
Target:  5'- gGCGGUggcugcgccuccuCGUCGGCCuGGGCugcuguuggguaacGCUGGCu -3'
miRNA:   3'- -CGCCAau-----------GUAGUUGG-CCCG--------------CGACCGc -5'
1614 5' -56 NC_001347.2 + 142116 0.68 0.899476
Target:  5'- cGCGGaUcuuauaaaaaaccGCGUCAugCuGGCGCUGGaCGc -3'
miRNA:   3'- -CGCCaA-------------UGUAGUugGcCCGCGACC-GC- -5'
1614 5' -56 NC_001347.2 + 92365 0.68 0.906191
Target:  5'- uCGGgacgcgGCAgCAACCaGGCGCcGGCGc -3'
miRNA:   3'- cGCCaa----UGUaGUUGGcCCGCGaCCGC- -5'
1614 5' -56 NC_001347.2 + 76621 0.68 0.917715
Target:  5'- gGCGGcgGCugCGGCCGcGGCGgaGGCc -3'
miRNA:   3'- -CGCCaaUGuaGUUGGC-CCGCgaCCGc -5'
1614 5' -56 NC_001347.2 + 209056 0.68 0.917715
Target:  5'- cGCGGUUGCgGUCGcgcACCGGcUGCagacagGGCGa -3'
miRNA:   3'- -CGCCAAUG-UAGU---UGGCCcGCGa-----CCGC- -5'
1614 5' -56 NC_001347.2 + 126608 0.68 0.917715
Target:  5'- aCGGUcugcgugcacUACGUCuaccuggccuACCGcacGGCGCUGGCa -3'
miRNA:   3'- cGCCA----------AUGUAGu---------UGGC---CCGCGACCGc -5'
1614 5' -56 NC_001347.2 + 182400 0.67 0.923143
Target:  5'- -aGGUgUACGUgGACgCGGGCG-UGGUGg -3'
miRNA:   3'- cgCCA-AUGUAgUUG-GCCCGCgACCGC- -5'
1614 5' -56 NC_001347.2 + 30597 0.67 0.923143
Target:  5'- gGCGGcuuccUGCGgcCGGCCGcGGUGCcGGCGg -3'
miRNA:   3'- -CGCCa----AUGUa-GUUGGC-CCGCGaCCGC- -5'
1614 5' -56 NC_001347.2 + 193966 0.67 0.927836
Target:  5'- uGCGGcgACA-CGggcACCGuguacgcGGCGCUGGUGg -3'
miRNA:   3'- -CGCCaaUGUaGU---UGGC-------CCGCGACCGC- -5'
1614 5' -56 NC_001347.2 + 8603 0.67 0.928346
Target:  5'- -gGGUgccCGUCAcGCa-GGCGCUGGCGu -3'
miRNA:   3'- cgCCAau-GUAGU-UGgcCCGCGACCGC- -5'
1614 5' -56 NC_001347.2 + 75404 0.67 0.928346
Target:  5'- aGCGGgaGCggCGGCCGuGGCgGC-GGCa -3'
miRNA:   3'- -CGCCaaUGuaGUUGGC-CCG-CGaCCGc -5'
1614 5' -56 NC_001347.2 + 189 0.67 0.933324
Target:  5'- gGCGGgugUGC--CGGCgGGGUGUggUGGCGg -3'
miRNA:   3'- -CGCCa--AUGuaGUUGgCCCGCG--ACCGC- -5'
1614 5' -56 NC_001347.2 + 229668 0.67 0.933324
Target:  5'- gGCGGgugUGC--CGGCgGGGUGUggUGGCGg -3'
miRNA:   3'- -CGCCa--AUGuaGUUGgCCCGCG--ACCGC- -5'
1614 5' -56 NC_001347.2 + 142 0.67 0.938079
Target:  5'- cGCGG--GCGUguGCCGGGUGUgucgugccgGGUGu -3'
miRNA:   3'- -CGCCaaUGUAguUGGCCCGCGa--------CCGC- -5'
1614 5' -56 NC_001347.2 + 75847 0.67 0.938079
Target:  5'- uGUGGcaacgACGUCGGCCgcgGGGCGCagcgccuccuUGGUGa -3'
miRNA:   3'- -CGCCaa---UGUAGUUGG---CCCGCG----------ACCGC- -5'
1614 5' -56 NC_001347.2 + 191782 0.67 0.938079
Target:  5'- uGUGGcgGCA-CAGCCGcaGGCGCUcugccaguuGGCGa -3'
miRNA:   3'- -CGCCaaUGUaGUUGGC--CCGCGA---------CCGC- -5'
1614 5' -56 NC_001347.2 + 229621 0.67 0.938079
Target:  5'- cGCGG--GCGUguGCCGGGUGUgucgugccgGGUGu -3'
miRNA:   3'- -CGCCaaUGUAguUGGCCCGCGa--------CCGC- -5'
1614 5' -56 NC_001347.2 + 48249 0.67 0.942611
Target:  5'- gGCGcaUAC-UCGGCCugGGGCGCgGGCu -3'
miRNA:   3'- -CGCcaAUGuAGUUGG--CCCGCGaCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.