Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1614 | 5' | -56 | NC_001347.2 | + | 190136 | 0.72 | 0.720045 |
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Target: 5'- aGCGGUacgggGCcgCAACCGGGUucuGCcGGCa -3' miRNA: 3'- -CGCCAa----UGuaGUUGGCCCG---CGaCCGc -5' |
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| 1614 | 5' | -56 | NC_001347.2 | + | 197284 | 0.73 | 0.661429 |
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Target: 5'- cGUGGgguCAUCGACCGacaaGGCGC-GGCGa -3' miRNA: 3'- -CGCCaauGUAGUUGGC----CCGCGaCCGC- -5' |
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| 1614 | 5' | -56 | NC_001347.2 | + | 222660 | 0.73 | 0.641628 |
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Target: 5'- cGCGaGUguucCAUaaaAGCCGGGCGCUccGGCGa -3' miRNA: 3'- -CGC-CAau--GUAg--UUGGCCCGCGA--CCGC- -5' |
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| 1614 | 5' | -56 | NC_001347.2 | + | 126660 | 0.73 | 0.641628 |
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Target: 5'- cGCGGUUGC-UCGaguACCGGcGCGUggUGGCu -3' miRNA: 3'- -CGCCAAUGuAGU---UGGCC-CGCG--ACCGc -5' |
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| 1614 | 5' | -56 | NC_001347.2 | + | 83901 | 0.74 | 0.611892 |
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Target: 5'- cGCGGUagcgGCAgugUCAaguACCaGGCGCUGGCc -3' miRNA: 3'- -CGCCAa---UGU---AGU---UGGcCCGCGACCGc -5' |
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| 1614 | 5' | -56 | NC_001347.2 | + | 26041 | 0.75 | 0.582283 |
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Target: 5'- uGCGGaUACG-CcGCCGGGCGCUG-CGg -3' miRNA: 3'- -CGCCaAUGUaGuUGGCCCGCGACcGC- -5' |
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| 1614 | 5' | -56 | NC_001347.2 | + | 67984 | 0.78 | 0.410667 |
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Target: 5'- cCGGUU-CAUCAACCGGGgaucccgcagcagucCGUUGGCGg -3' miRNA: 3'- cGCCAAuGUAGUUGGCCC---------------GCGACCGC- -5' |
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| 1614 | 5' | -56 | NC_001347.2 | + | 147188 | 1.1 | 0.003972 |
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Target: 5'- cGCGGUUACAUCAACCGGGCGCUGGCGc -3' miRNA: 3'- -CGCCAAUGUAGUUGGCCCGCGACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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