miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1614 5' -56 NC_001347.2 + 142 0.67 0.938079
Target:  5'- cGCGG--GCGUguGCCGGGUGUgucgugccgGGUGu -3'
miRNA:   3'- -CGCCaaUGUAguUGGCCCGCGa--------CCGC- -5'
1614 5' -56 NC_001347.2 + 189 0.67 0.933324
Target:  5'- gGCGGgugUGC--CGGCgGGGUGUggUGGCGg -3'
miRNA:   3'- -CGCCa--AUGuaGUUGgCCCGCG--ACCGC- -5'
1614 5' -56 NC_001347.2 + 1604 0.66 0.954509
Target:  5'- gGUGGUgcggcuguaccgcUGCAacCGGCUGGGCGUgGGCa -3'
miRNA:   3'- -CGCCA-------------AUGUa-GUUGGCCCGCGaCCGc -5'
1614 5' -56 NC_001347.2 + 1735 0.66 0.964296
Target:  5'- gGCGGUgggccgGCA-CGACgGuGGCGCUgcagacgccgggcaGGCGa -3'
miRNA:   3'- -CGCCAa-----UGUaGUUGgC-CCGCGA--------------CCGC- -5'
1614 5' -56 NC_001347.2 + 2353 0.7 0.802625
Target:  5'- cGCGG--GCGU--GCUGGGCGCgcUGGCGc -3'
miRNA:   3'- -CGCCaaUGUAguUGGCCCGCG--ACCGC- -5'
1614 5' -56 NC_001347.2 + 8603 0.67 0.928346
Target:  5'- -gGGUgccCGUCAcGCa-GGCGCUGGCGu -3'
miRNA:   3'- cgCCAau-GUAGU-UGgcCCGCGACCGC- -5'
1614 5' -56 NC_001347.2 + 9181 0.66 0.964934
Target:  5'- uGUGGUaccaggaUACAUCG--CGGGaaaagaguCGCUGGCGa -3'
miRNA:   3'- -CGCCA-------AUGUAGUugGCCC--------GCGACCGC- -5'
1614 5' -56 NC_001347.2 + 26041 0.75 0.582283
Target:  5'- uGCGGaUACG-CcGCCGGGCGCUG-CGg -3'
miRNA:   3'- -CGCCaAUGUaGuUGGCCCGCGACcGC- -5'
1614 5' -56 NC_001347.2 + 30597 0.67 0.923143
Target:  5'- gGCGGcuuccUGCGgcCGGCCGcGGUGCcGGCGg -3'
miRNA:   3'- -CGCCa----AUGUa-GUUGGC-CCGCGaCCGC- -5'
1614 5' -56 NC_001347.2 + 31394 0.68 0.894427
Target:  5'- gGCGGUggcugcgccuccuCGUCGGCCuGGGCugcuguuggguaacGCUGGCu -3'
miRNA:   3'- -CGCCAau-----------GUAGUUGG-CCCG--------------CGACCGc -5'
1614 5' -56 NC_001347.2 + 37036 0.7 0.81959
Target:  5'- gGCGuGUguuugACAuuuuuUCGGCCGcggaGGUGCUGGCGg -3'
miRNA:   3'- -CGC-CAa----UGU-----AGUUGGC----CCGCGACCGC- -5'
1614 5' -56 NC_001347.2 + 37147 0.7 0.843821
Target:  5'- cGCGGUUcUAUCcccgaauUUGGGCGgUGGCGg -3'
miRNA:   3'- -CGCCAAuGUAGuu-----GGCCCGCgACCGC- -5'
1614 5' -56 NC_001347.2 + 41160 0.7 0.802625
Target:  5'- cGCGGaa--AUCcGCCGcGGCGgUGGCGa -3'
miRNA:   3'- -CGCCaaugUAGuUGGC-CCGCgACCGC- -5'
1614 5' -56 NC_001347.2 + 44031 0.7 0.843821
Target:  5'- cGCGGUggcgACggCAGCgGugguGGCGCUGGgGg -3'
miRNA:   3'- -CGCCAa---UGuaGUUGgC----CCGCGACCgC- -5'
1614 5' -56 NC_001347.2 + 48249 0.67 0.942611
Target:  5'- gGCGcaUAC-UCGGCCugGGGCGCgGGCu -3'
miRNA:   3'- -CGCcaAUGuAGUUGG--CCCGCGaCCGc -5'
1614 5' -56 NC_001347.2 + 51208 0.7 0.809484
Target:  5'- cGCGGcgUACGUCaccgcgcuauuauccAccauccgaagcuacaGCCGGGCGUUGGCc -3'
miRNA:   3'- -CGCCa-AUGUAG---------------U---------------UGGCCCGCGACCGc -5'
1614 5' -56 NC_001347.2 + 55358 0.66 0.965249
Target:  5'- uGCGGUuuuggcagUACAUCAA-UGGGCGUggauaGCGg -3'
miRNA:   3'- -CGCCA--------AUGUAGUUgGCCCGCGac---CGC- -5'
1614 5' -56 NC_001347.2 + 59041 0.66 0.958549
Target:  5'- gGCGGaggaGCAUCcguGACCucgagccaccauGGGCGC-GGCGg -3'
miRNA:   3'- -CGCCaa--UGUAG---UUGG------------CCCGCGaCCGC- -5'
1614 5' -56 NC_001347.2 + 66833 0.72 0.729616
Target:  5'- -aGaGUUACuggCAGCCGcGGCGgUGGCGa -3'
miRNA:   3'- cgC-CAAUGua-GUUGGC-CCGCgACCGC- -5'
1614 5' -56 NC_001347.2 + 67984 0.78 0.410667
Target:  5'- cCGGUU-CAUCAACCGGGgaucccgcagcagucCGUUGGCGg -3'
miRNA:   3'- cGCCAAuGUAGUUGGCCC---------------GCGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.