miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1614 5' -56 NC_001347.2 + 75404 0.67 0.928346
Target:  5'- aGCGGgaGCggCGGCCGuGGCgGC-GGCa -3'
miRNA:   3'- -CGCCaaUGuaGUUGGC-CCG-CGaCCGc -5'
1614 5' -56 NC_001347.2 + 75847 0.67 0.938079
Target:  5'- uGUGGcaacgACGUCGGCCgcgGGGCGCagcgccuccuUGGUGa -3'
miRNA:   3'- -CGCCaa---UGUAGUUGG---CCCGCG----------ACCGC- -5'
1614 5' -56 NC_001347.2 + 76621 0.68 0.917715
Target:  5'- gGCGGcgGCugCGGCCGcGGCGgaGGCc -3'
miRNA:   3'- -CGCCaaUGuaGUUGGC-CCGCgaCCGc -5'
1614 5' -56 NC_001347.2 + 83901 0.74 0.611892
Target:  5'- cGCGGUagcgGCAgugUCAaguACCaGGCGCUGGCc -3'
miRNA:   3'- -CGCCAa---UGU---AGU---UGGcCCGCGACCGc -5'
1614 5' -56 NC_001347.2 + 92365 0.68 0.906191
Target:  5'- uCGGgacgcgGCAgCAACCaGGCGCcGGCGc -3'
miRNA:   3'- cGCCaa----UGUaGUUGGcCCGCGaCCGC- -5'
1614 5' -56 NC_001347.2 + 93190 0.71 0.776111
Target:  5'- uGCGGUUugGgc-GCCGagcgcucGCGCUGGCGa -3'
miRNA:   3'- -CGCCAAugUaguUGGCc------CGCGACCGC- -5'
1614 5' -56 NC_001347.2 + 110849 0.69 0.859084
Target:  5'- uCGGUUuacacGCAUCGcGCCGaGGUGgUGGCGc -3'
miRNA:   3'- cGCCAA-----UGUAGU-UGGC-CCGCgACCGC- -5'
1614 5' -56 NC_001347.2 + 126608 0.68 0.917715
Target:  5'- aCGGUcugcgugcacUACGUCuaccuggccuACCGcacGGCGCUGGCa -3'
miRNA:   3'- cGCCA----------AUGUAGu---------UGGC---CCGCGACCGc -5'
1614 5' -56 NC_001347.2 + 126660 0.73 0.641628
Target:  5'- cGCGGUUGC-UCGaguACCGGcGCGUggUGGCu -3'
miRNA:   3'- -CGCCAAUGuAGU---UGGCC-CGCG--ACCGc -5'
1614 5' -56 NC_001347.2 + 140691 0.69 0.873578
Target:  5'- gGCGGUcGCAU--GuuGGGCGCUaGCGu -3'
miRNA:   3'- -CGCCAaUGUAguUggCCCGCGAcCGC- -5'
1614 5' -56 NC_001347.2 + 142116 0.68 0.899476
Target:  5'- cGCGGaUcuuauaaaaaaccGCGUCAugCuGGCGCUGGaCGc -3'
miRNA:   3'- -CGCCaA-------------UGUAGUugGcCCGCGACC-GC- -5'
1614 5' -56 NC_001347.2 + 142566 0.66 0.965249
Target:  5'- gGCuGGcgGCGUCGGCgGGaGCaGCgggGGCGg -3'
miRNA:   3'- -CG-CCaaUGUAGUUGgCC-CG-CGa--CCGC- -5'
1614 5' -56 NC_001347.2 + 144578 0.66 0.964934
Target:  5'- aCGGUgGCggCGGCCGGGCucguggaGgaGGCa -3'
miRNA:   3'- cGCCAaUGuaGUUGGCCCG-------CgaCCGc -5'
1614 5' -56 NC_001347.2 + 147188 1.1 0.003972
Target:  5'- cGCGGUUACAUCAACCGGGCGCUGGCGc -3'
miRNA:   3'- -CGCCAAUGUAGUUGGCCCGCGACCGC- -5'
1614 5' -56 NC_001347.2 + 153237 0.69 0.86643
Target:  5'- cGCGGgcgcGCGUCGGCC-GGCGaC-GGCGg -3'
miRNA:   3'- -CGCCaa--UGUAGUUGGcCCGC-GaCCGC- -5'
1614 5' -56 NC_001347.2 + 166049 0.68 0.893786
Target:  5'- uCGGUgucggGCGUCAugCGGaGuCGC-GGCGg -3'
miRNA:   3'- cGCCAa----UGUAGUugGCC-C-GCGaCCGC- -5'
1614 5' -56 NC_001347.2 + 182400 0.67 0.923143
Target:  5'- -aGGUgUACGUgGACgCGGGCG-UGGUGg -3'
miRNA:   3'- cgCCA-AUGUAgUUG-GCCCGCgACCGC- -5'
1614 5' -56 NC_001347.2 + 184967 0.66 0.962002
Target:  5'- gGCGGcucGCGgaGACUGGGCuGCaGGCGg -3'
miRNA:   3'- -CGCCaa-UGUagUUGGCCCG-CGaCCGC- -5'
1614 5' -56 NC_001347.2 + 190136 0.72 0.720045
Target:  5'- aGCGGUacgggGCcgCAACCGGGUucuGCcGGCa -3'
miRNA:   3'- -CGCCAa----UGuaGUUGGCCCG---CGaCCGc -5'
1614 5' -56 NC_001347.2 + 191404 0.68 0.893786
Target:  5'- aGCGGUUGCAgCAcCaCGGaGCucucGCUGGUGg -3'
miRNA:   3'- -CGCCAAUGUaGUuG-GCC-CG----CGACCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.