miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1614 5' -56 NC_001347.2 + 229668 0.67 0.933324
Target:  5'- gGCGGgugUGC--CGGCgGGGUGUggUGGCGg -3'
miRNA:   3'- -CGCCa--AUGuaGUUGgCCCGCG--ACCGC- -5'
1614 5' -56 NC_001347.2 + 229621 0.67 0.938079
Target:  5'- cGCGG--GCGUguGCCGGGUGUgucgugccgGGUGu -3'
miRNA:   3'- -CGCCaaUGUAguUGGCCCGCGa--------CCGC- -5'
1614 5' -56 NC_001347.2 + 222660 0.73 0.641628
Target:  5'- cGCGaGUguucCAUaaaAGCCGGGCGCUccGGCGa -3'
miRNA:   3'- -CGC-CAau--GUAg--UUGGCCCGCGA--CCGC- -5'
1614 5' -56 NC_001347.2 + 209056 0.68 0.917715
Target:  5'- cGCGGUUGCgGUCGcgcACCGGcUGCagacagGGCGa -3'
miRNA:   3'- -CGCCAAUG-UAGU---UGGCCcGCGa-----CCGC- -5'
1614 5' -56 NC_001347.2 + 197284 0.73 0.661429
Target:  5'- cGUGGgguCAUCGACCGacaaGGCGC-GGCGa -3'
miRNA:   3'- -CGCCaauGUAGUUGGC----CCGCGaCCGC- -5'
1614 5' -56 NC_001347.2 + 193966 0.67 0.927836
Target:  5'- uGCGGcgACA-CGggcACCGuguacgcGGCGCUGGUGg -3'
miRNA:   3'- -CGCCaaUGUaGU---UGGC-------CCGCGACCGC- -5'
1614 5' -56 NC_001347.2 + 192167 0.68 0.893786
Target:  5'- cGCGGUUuccgcCGUCuccggaugagcGGCCGcGGCGCgGGCu -3'
miRNA:   3'- -CGCCAAu----GUAG-----------UUGGC-CCGCGaCCGc -5'
1614 5' -56 NC_001347.2 + 191782 0.67 0.938079
Target:  5'- uGUGGcgGCA-CAGCCGcaGGCGCUcugccaguuGGCGa -3'
miRNA:   3'- -CGCCaaUGUaGUUGGC--CCGCGA---------CCGC- -5'
1614 5' -56 NC_001347.2 + 191404 0.68 0.893786
Target:  5'- aGCGGUUGCAgCAcCaCGGaGCucucGCUGGUGg -3'
miRNA:   3'- -CGCCAAUGUaGUuG-GCC-CG----CGACCGC- -5'
1614 5' -56 NC_001347.2 + 190136 0.72 0.720045
Target:  5'- aGCGGUacgggGCcgCAACCGGGUucuGCcGGCa -3'
miRNA:   3'- -CGCCAa----UGuaGUUGGCCCG---CGaCCGc -5'
1614 5' -56 NC_001347.2 + 184967 0.66 0.962002
Target:  5'- gGCGGcucGCGgaGACUGGGCuGCaGGCGg -3'
miRNA:   3'- -CGCCaa-UGUagUUGGCCCG-CGaCCGC- -5'
1614 5' -56 NC_001347.2 + 182400 0.67 0.923143
Target:  5'- -aGGUgUACGUgGACgCGGGCG-UGGUGg -3'
miRNA:   3'- cgCCA-AUGUAgUUG-GCCCGCgACCGC- -5'
1614 5' -56 NC_001347.2 + 166049 0.68 0.893786
Target:  5'- uCGGUgucggGCGUCAugCGGaGuCGC-GGCGg -3'
miRNA:   3'- cGCCAa----UGUAGUugGCC-C-GCGaCCGC- -5'
1614 5' -56 NC_001347.2 + 153237 0.69 0.86643
Target:  5'- cGCGGgcgcGCGUCGGCC-GGCGaC-GGCGg -3'
miRNA:   3'- -CGCCaa--UGUAGUUGGcCCGC-GaCCGC- -5'
1614 5' -56 NC_001347.2 + 147188 1.1 0.003972
Target:  5'- cGCGGUUACAUCAACCGGGCGCUGGCGc -3'
miRNA:   3'- -CGCCAAUGUAGUUGGCCCGCGACCGC- -5'
1614 5' -56 NC_001347.2 + 144578 0.66 0.964934
Target:  5'- aCGGUgGCggCGGCCGGGCucguggaGgaGGCa -3'
miRNA:   3'- cGCCAaUGuaGUUGGCCCG-------CgaCCGc -5'
1614 5' -56 NC_001347.2 + 142566 0.66 0.965249
Target:  5'- gGCuGGcgGCGUCGGCgGGaGCaGCgggGGCGg -3'
miRNA:   3'- -CG-CCaaUGUAGUUGgCC-CG-CGa--CCGC- -5'
1614 5' -56 NC_001347.2 + 142116 0.68 0.899476
Target:  5'- cGCGGaUcuuauaaaaaaccGCGUCAugCuGGCGCUGGaCGc -3'
miRNA:   3'- -CGCCaA-------------UGUAGUugGcCCGCGACC-GC- -5'
1614 5' -56 NC_001347.2 + 140691 0.69 0.873578
Target:  5'- gGCGGUcGCAU--GuuGGGCGCUaGCGu -3'
miRNA:   3'- -CGCCAaUGUAguUggCCCGCGAcCGC- -5'
1614 5' -56 NC_001347.2 + 126660 0.73 0.641628
Target:  5'- cGCGGUUGC-UCGaguACCGGcGCGUggUGGCu -3'
miRNA:   3'- -CGCCAAUGuAGU---UGGCC-CGCG--ACCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.