miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16140 3' -55.3 NC_004065.1 + 82586 0.66 0.971926
Target:  5'- gCAG-AACUCguuggcguccaUGaCGCCGUCGuGCUGCu -3'
miRNA:   3'- -GUCuUUGAG-----------AC-GCGGUAGCuCGGCGc -5'
16140 3' -55.3 NC_004065.1 + 74583 0.66 0.971926
Target:  5'- cCAGGGACaguugGUGCCGUCG-GUgGCGg -3'
miRNA:   3'- -GUCUUUGaga--CGCGGUAGCuCGgCGC- -5'
16140 3' -55.3 NC_004065.1 + 125135 0.66 0.971926
Target:  5'- ---------cGCGCCGUCGcccAGCCGCGu -3'
miRNA:   3'- gucuuugagaCGCGGUAGC---UCGGCGC- -5'
16140 3' -55.3 NC_004065.1 + 152791 0.66 0.969963
Target:  5'- gCAGGAACUCggugGCcacgaucagcgugGCCAUCGccgugcggggcgccGCCGCGc -3'
miRNA:   3'- -GUCUUUGAGa---CG-------------CGGUAGCu-------------CGGCGC- -5'
16140 3' -55.3 NC_004065.1 + 89723 0.66 0.969093
Target:  5'- uGGAGA-UCUGCGCCGUCGucagggGGuuGuCGa -3'
miRNA:   3'- gUCUUUgAGACGCGGUAGC------UCggC-GC- -5'
16140 3' -55.3 NC_004065.1 + 168748 0.66 0.969093
Target:  5'- aAGAuccucAGCUCcaaGC-CCGUCGAcGCCGCGc -3'
miRNA:   3'- gUCU-----UUGAGa--CGcGGUAGCU-CGGCGC- -5'
16140 3' -55.3 NC_004065.1 + 86044 0.66 0.969093
Target:  5'- cCAGAccaucUUCUGCagGUCGUUGAGCuCGCGg -3'
miRNA:   3'- -GUCUuu---GAGACG--CGGUAGCUCG-GCGC- -5'
16140 3' -55.3 NC_004065.1 + 37814 0.66 0.969093
Target:  5'- -cGAggUg--GUGCCGUCgGAGCUGCGc -3'
miRNA:   3'- guCUuuGagaCGCGGUAG-CUCGGCGC- -5'
16140 3' -55.3 NC_004065.1 + 45800 0.66 0.969093
Target:  5'- uCGGggGCUg-GCGCCAcac-GCCGCGu -3'
miRNA:   3'- -GUCuuUGAgaCGCGGUagcuCGGCGC- -5'
16140 3' -55.3 NC_004065.1 + 187558 0.66 0.966061
Target:  5'- gGGAAccACUC-GCGCCAgcauggCGA-CCGCGu -3'
miRNA:   3'- gUCUU--UGAGaCGCGGUa-----GCUcGGCGC- -5'
16140 3' -55.3 NC_004065.1 + 88359 0.66 0.966061
Target:  5'- uGGGAccGCUCU-CGUCcgCG-GCCGCGg -3'
miRNA:   3'- gUCUU--UGAGAcGCGGuaGCuCGGCGC- -5'
16140 3' -55.3 NC_004065.1 + 61092 0.66 0.966061
Target:  5'- -cGcuGCUCUGCGUCG-CGuacGCCGUGa -3'
miRNA:   3'- guCuuUGAGACGCGGUaGCu--CGGCGC- -5'
16140 3' -55.3 NC_004065.1 + 8124 0.66 0.962826
Target:  5'- cCAGAGcCgg-GCGCCGUCGAGgucgaCGCa -3'
miRNA:   3'- -GUCUUuGagaCGCGGUAGCUCg----GCGc -5'
16140 3' -55.3 NC_004065.1 + 91711 0.66 0.962826
Target:  5'- aGGAGGcCUCgcaCGCgAUCaGGGCCGCGu -3'
miRNA:   3'- gUCUUU-GAGac-GCGgUAG-CUCGGCGC- -5'
16140 3' -55.3 NC_004065.1 + 94820 0.66 0.962826
Target:  5'- aAGAAAC-CcGgGCCGUCG-GCgGCGg -3'
miRNA:   3'- gUCUUUGaGaCgCGGUAGCuCGgCGC- -5'
16140 3' -55.3 NC_004065.1 + 121841 0.66 0.962826
Target:  5'- gGGGAugUCUGgGgUuucgGUCGuGCCGCGc -3'
miRNA:   3'- gUCUUugAGACgCgG----UAGCuCGGCGC- -5'
16140 3' -55.3 NC_004065.1 + 30313 0.66 0.962826
Target:  5'- cCAGAGAUUCUGCGa-GUCuGAGCaGCu -3'
miRNA:   3'- -GUCUUUGAGACGCggUAG-CUCGgCGc -5'
16140 3' -55.3 NC_004065.1 + 149686 0.66 0.959382
Target:  5'- cCAGGG--UCUGCaggugaacGCCGggGGGCCGCGg -3'
miRNA:   3'- -GUCUUugAGACG--------CGGUagCUCGGCGC- -5'
16140 3' -55.3 NC_004065.1 + 112856 0.66 0.959382
Target:  5'- cCAGggGCggaccccgUCgGCGCUGUCGGuGCCGUu -3'
miRNA:   3'- -GUCuuUG--------AGaCGCGGUAGCU-CGGCGc -5'
16140 3' -55.3 NC_004065.1 + 190063 0.66 0.959026
Target:  5'- aCAGAGAgUUCUGUuCUGUCcgacaauGAGCCGCGg -3'
miRNA:   3'- -GUCUUU-GAGACGcGGUAG-------CUCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.