miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16140 5' -59.1 NC_004065.1 + 83985 0.65 0.878611
Target:  5'- aUCCUCGGucguggcGCCUUCGGCGAugauggacuggaucGCCGUa-- -3'
miRNA:   3'- -AGGGGUU-------CGGGAGCCGCU--------------UGGCGaag -5'
16140 5' -59.1 NC_004065.1 + 40618 0.66 0.876558
Target:  5'- cUUCCCGAGaaaaucaaaUCCUCGGCGAcggugacGCCgaacggcacgaucuuGCUUCa -3'
miRNA:   3'- -AGGGGUUC---------GGGAGCCGCU-------UGG---------------CGAAG- -5'
16140 5' -59.1 NC_004065.1 + 94368 0.66 0.874487
Target:  5'- cCCCCGacgcgcguuacGGCCg-CGGCGAGCUGUc-- -3'
miRNA:   3'- aGGGGU-----------UCGGgaGCCGCUUGGCGaag -5'
16140 5' -59.1 NC_004065.1 + 93809 0.66 0.874487
Target:  5'- cUUCCCA-GCCC-CGGCGAcUgGCUg- -3'
miRNA:   3'- -AGGGGUuCGGGaGCCGCUuGgCGAag -5'
16140 5' -59.1 NC_004065.1 + 101087 0.66 0.874487
Target:  5'- gUCUCGGGCguuucucgCCUUGGCGAacGCCGCg-- -3'
miRNA:   3'- aGGGGUUCG--------GGAGCCGCU--UGGCGaag -5'
16140 5' -59.1 NC_004065.1 + 195101 0.66 0.874487
Target:  5'- cCCCCAggggcgucAGCUCgcCGGCGGugucGCCGCa-- -3'
miRNA:   3'- aGGGGU--------UCGGGa-GCCGCU----UGGCGaag -5'
16140 5' -59.1 NC_004065.1 + 68415 0.66 0.874487
Target:  5'- aCCCCAu-CCC-CGGgGAGCgCGCgUUCg -3'
miRNA:   3'- aGGGGUucGGGaGCCgCUUG-GCG-AAG- -5'
16140 5' -59.1 NC_004065.1 + 152523 0.66 0.874487
Target:  5'- cUCCUCGGGCUCcgcCGGCGc-CgGCUUCu -3'
miRNA:   3'- -AGGGGUUCGGGa--GCCGCuuGgCGAAG- -5'
16140 5' -59.1 NC_004065.1 + 133341 0.66 0.873793
Target:  5'- gUCCCCucGCCCgcacgauccuccgUCgGGCGAGcCCGCc-- -3'
miRNA:   3'- -AGGGGuuCGGG-------------AG-CCGCUU-GGCGaag -5'
16140 5' -59.1 NC_004065.1 + 199912 0.66 0.870292
Target:  5'- cUCCCCAGGCCgC-CGGgGcugcagcucucgcuACCGCUg- -3'
miRNA:   3'- -AGGGGUUCGG-GaGCCgCu-------------UGGCGAag -5'
16140 5' -59.1 NC_004065.1 + 126239 0.66 0.867456
Target:  5'- gUCUUCAcGCCCgugCGGCGGaucgaGCCGCc-- -3'
miRNA:   3'- -AGGGGUuCGGGa--GCCGCU-----UGGCGaag -5'
16140 5' -59.1 NC_004065.1 + 56229 0.66 0.867456
Target:  5'- aUCCUAGGCaguuucCCUCGGUcGACCGgaUCg -3'
miRNA:   3'- aGGGGUUCG------GGAGCCGcUUGGCgaAG- -5'
16140 5' -59.1 NC_004065.1 + 170472 0.66 0.867456
Target:  5'- gCCgCCGcAGaCCgCUCGGCGAGCU-CUUCg -3'
miRNA:   3'- aGG-GGU-UC-GG-GAGCCGCUUGGcGAAG- -5'
16140 5' -59.1 NC_004065.1 + 155339 0.66 0.867456
Target:  5'- aUCCCCAucggcaaucGGaCCCUgcgcuaCGGCGGACgCGCcgCg -3'
miRNA:   3'- -AGGGGU---------UC-GGGA------GCCGCUUG-GCGaaG- -5'
16140 5' -59.1 NC_004065.1 + 86905 0.66 0.860231
Target:  5'- gCgCCGGucucGCCCUCGGCGGcGCgCGCgUCg -3'
miRNA:   3'- aGgGGUU----CGGGAGCCGCU-UG-GCGaAG- -5'
16140 5' -59.1 NC_004065.1 + 93875 0.66 0.860231
Target:  5'- cUCCCCGAGCUCcCGGUcccuGucCgGCUUCc -3'
miRNA:   3'- -AGGGGUUCGGGaGCCG----CuuGgCGAAG- -5'
16140 5' -59.1 NC_004065.1 + 229890 0.66 0.860231
Target:  5'- gUgCCAcGCCCUCGGUGAcguGCgCGCa-- -3'
miRNA:   3'- aGgGGUuCGGGAGCCGCU---UG-GCGaag -5'
16140 5' -59.1 NC_004065.1 + 126710 0.66 0.860231
Target:  5'- -aCCUAcGCCUgCGGCGA-CCGCUg- -3'
miRNA:   3'- agGGGUuCGGGaGCCGCUuGGCGAag -5'
16140 5' -59.1 NC_004065.1 + 196888 0.66 0.860231
Target:  5'- aUCCCCcuGCCCUucaCGGCcgucGACUGCa-- -3'
miRNA:   3'- -AGGGGuuCGGGA---GCCGc---UUGGCGaag -5'
16140 5' -59.1 NC_004065.1 + 49596 0.66 0.852817
Target:  5'- -gCCCGGGUCCcUGaCGAACCGCUcguUCa -3'
miRNA:   3'- agGGGUUCGGGaGCcGCUUGGCGA---AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.