miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16141 5' -57.8 NC_004065.1 + 64856 0.66 0.926731
Target:  5'- --cCGGCGUgGUGUucGCAu--CCUGCGg -3'
miRNA:   3'- gaaGCCGCAgCGCG--CGUucuGGACGC- -5'
16141 5' -57.8 NC_004065.1 + 78885 0.66 0.926731
Target:  5'- -gUC-GCGgagCGCGUGCAccACCUGCa -3'
miRNA:   3'- gaAGcCGCa--GCGCGCGUucUGGACGc -5'
16141 5' -57.8 NC_004065.1 + 55876 0.66 0.926731
Target:  5'- -aUCGGCGUCGaucgGCGUccAGGCCgaUGCc -3'
miRNA:   3'- gaAGCCGCAGCg---CGCGu-UCUGG--ACGc -5'
16141 5' -57.8 NC_004065.1 + 31475 0.66 0.926731
Target:  5'- -gUCcGUGcCGCGCGCG-GACCUgguGCGg -3'
miRNA:   3'- gaAGcCGCaGCGCGCGUuCUGGA---CGC- -5'
16141 5' -57.8 NC_004065.1 + 104833 0.66 0.926731
Target:  5'- --cUGGCGUCa---GCGGGGCCUGCu -3'
miRNA:   3'- gaaGCCGCAGcgcgCGUUCUGGACGc -5'
16141 5' -57.8 NC_004065.1 + 114997 0.66 0.926731
Target:  5'- --cUGGCGgC-CGCGC-GGAUCUGCGa -3'
miRNA:   3'- gaaGCCGCaGcGCGCGuUCUGGACGC- -5'
16141 5' -57.8 NC_004065.1 + 105169 0.66 0.926731
Target:  5'- -cUCGGaCGUgGCGCGgAugaucgcgauGGACCagGCGg -3'
miRNA:   3'- gaAGCC-GCAgCGCGCgU----------UCUGGa-CGC- -5'
16141 5' -57.8 NC_004065.1 + 199254 0.66 0.926731
Target:  5'- -gUCGGCGUC-CGCGUccgccGACCU-CGg -3'
miRNA:   3'- gaAGCCGCAGcGCGCGuu---CUGGAcGC- -5'
16141 5' -57.8 NC_004065.1 + 117015 0.66 0.926219
Target:  5'- ---aGGCGaUGCGCGCucacgugccgaccGAGACgCUGCa -3'
miRNA:   3'- gaagCCGCaGCGCGCG-------------UUCUG-GACGc -5'
16141 5' -57.8 NC_004065.1 + 32960 0.66 0.92519
Target:  5'- ---gGGCGUCGaCGuCGCGgcggagcaugacggAGGCCUcGCGg -3'
miRNA:   3'- gaagCCGCAGC-GC-GCGU--------------UCUGGA-CGC- -5'
16141 5' -57.8 NC_004065.1 + 149638 0.66 0.921517
Target:  5'- --cCGGCGcCGuCG-GCAGGcCCUGCa -3'
miRNA:   3'- gaaGCCGCaGC-GCgCGUUCuGGACGc -5'
16141 5' -57.8 NC_004065.1 + 117227 0.66 0.921517
Target:  5'- --aCGGaCGUCGCGaGCGacAGACCgGUGu -3'
miRNA:   3'- gaaGCC-GCAGCGCgCGU--UCUGGaCGC- -5'
16141 5' -57.8 NC_004065.1 + 35737 0.66 0.916084
Target:  5'- -cUCGGCGccagaUCGCGguUGCAGGACg-GCGu -3'
miRNA:   3'- gaAGCCGC-----AGCGC--GCGUUCUGgaCGC- -5'
16141 5' -57.8 NC_004065.1 + 7222 0.66 0.916084
Target:  5'- -cUCGGgccuCGUCGUGUGCGAcaucGACCaUGUGa -3'
miRNA:   3'- gaAGCC----GCAGCGCGCGUU----CUGG-ACGC- -5'
16141 5' -57.8 NC_004065.1 + 67284 0.66 0.916084
Target:  5'- --aCGGCGga--GaCGCAGGACCUGgGg -3'
miRNA:   3'- gaaGCCGCagcgC-GCGUUCUGGACgC- -5'
16141 5' -57.8 NC_004065.1 + 177937 0.66 0.910433
Target:  5'- uCUUCGGCGcCGC-CGCuucuCCUGgGg -3'
miRNA:   3'- -GAAGCCGCaGCGcGCGuucuGGACgC- -5'
16141 5' -57.8 NC_004065.1 + 94632 0.66 0.910433
Target:  5'- --aCGGgGUCGgGCGC--GGCCgGCGc -3'
miRNA:   3'- gaaGCCgCAGCgCGCGuuCUGGaCGC- -5'
16141 5' -57.8 NC_004065.1 + 206556 0.66 0.904565
Target:  5'- -cUCGGCGUCGUcaucGuCGCGAG-CC-GCGc -3'
miRNA:   3'- gaAGCCGCAGCG----C-GCGUUCuGGaCGC- -5'
16141 5' -57.8 NC_004065.1 + 202109 0.66 0.904565
Target:  5'- -gUCGGCGgCGCuCGCGuu-CCUGCa -3'
miRNA:   3'- gaAGCCGCaGCGcGCGUucuGGACGc -5'
16141 5' -57.8 NC_004065.1 + 92521 0.66 0.904565
Target:  5'- --cCGGUGccUCGCGCGCGcguacGGGCggGCGg -3'
miRNA:   3'- gaaGCCGC--AGCGCGCGU-----UCUGgaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.