miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16142 3' -58 NC_004065.1 + 97488 0.66 0.934935
Target:  5'- cCCGGAGuGCcGCaGCGAUcuGCGGCGGa -3'
miRNA:   3'- -GGCCUC-CGcUGcCGCUAc-UGCUGCUa -5'
16142 3' -58 NC_004065.1 + 66768 0.66 0.934935
Target:  5'- -aGGAGGCGcCGGCGccGccgcugcgcCGACGAa -3'
miRNA:   3'- ggCCUCCGCuGCCGCuaCu--------GCUGCUa -5'
16142 3' -58 NC_004065.1 + 56715 0.66 0.934935
Target:  5'- gCCGca-GCGGCGGCGgcGGCGGCa-- -3'
miRNA:   3'- -GGCcucCGCUGCCGCuaCUGCUGcua -5'
16142 3' -58 NC_004065.1 + 24916 0.66 0.934935
Target:  5'- uCCGGAGGCGccauauCGaGCGAUcGACaGCGu- -3'
miRNA:   3'- -GGCCUCCGCu-----GC-CGCUA-CUGcUGCua -5'
16142 3' -58 NC_004065.1 + 30019 0.66 0.934935
Target:  5'- aCCGucaccGGCG-CGGUGGUGACGggcACGAa -3'
miRNA:   3'- -GGCcu---CCGCuGCCGCUACUGC---UGCUa -5'
16142 3' -58 NC_004065.1 + 36292 0.66 0.934935
Target:  5'- gCC-GAGGCGAUGGCGccuuCGACGc- -3'
miRNA:   3'- -GGcCUCCGCUGCCGCuacuGCUGCua -5'
16142 3' -58 NC_004065.1 + 185967 0.66 0.934935
Target:  5'- gCGGuugaAGGaGAUGGCGAUGAUG-CGGa -3'
miRNA:   3'- gGCC----UCCgCUGCCGCUACUGCuGCUa -5'
16142 3' -58 NC_004065.1 + 115770 0.66 0.934935
Target:  5'- gCGGAGGCGGCaggguuGGCGGUcccgGGC-ACGGa -3'
miRNA:   3'- gGCCUCCGCUG------CCGCUA----CUGcUGCUa -5'
16142 3' -58 NC_004065.1 + 22301 0.66 0.934935
Target:  5'- gUCGGugGGGUgGACGGUGAcguUGACGACc-- -3'
miRNA:   3'- -GGCC--UCCG-CUGCCGCU---ACUGCUGcua -5'
16142 3' -58 NC_004065.1 + 153635 0.66 0.932085
Target:  5'- cUCGGAcGGCGgcgagcucauccgcgGCGGCGccGGCG-CGAUg -3'
miRNA:   3'- -GGCCU-CCGC---------------UGCCGCuaCUGCuGCUA- -5'
16142 3' -58 NC_004065.1 + 179675 0.66 0.930142
Target:  5'- gCGGGGGgGcucgggaucGCGGCGGUGGCcACGc- -3'
miRNA:   3'- gGCCUCCgC---------UGCCGCUACUGcUGCua -5'
16142 3' -58 NC_004065.1 + 101850 0.66 0.930142
Target:  5'- gCGGGGGCGuCGGgGGcgcUaucgccgccgcaGACGACGAc -3'
miRNA:   3'- gGCCUCCGCuGCCgCU---A------------CUGCUGCUa -5'
16142 3' -58 NC_004065.1 + 71949 0.66 0.930142
Target:  5'- gUCGGAGGCGACGcCGccgGugGAgcCGGg -3'
miRNA:   3'- -GGCCUCCGCUGCcGCua-CugCU--GCUa -5'
16142 3' -58 NC_004065.1 + 103702 0.66 0.930142
Target:  5'- aCGGuGGGCGGCGGgGAgcgccUGGCgGGCGu- -3'
miRNA:   3'- gGCC-UCCGCUGCCgCU-----ACUG-CUGCua -5'
16142 3' -58 NC_004065.1 + 64211 0.66 0.930142
Target:  5'- gCGGAGGCaGuguCGGCGgcGAgGACa-- -3'
miRNA:   3'- gGCCUCCG-Cu--GCCGCuaCUgCUGcua -5'
16142 3' -58 NC_004065.1 + 54510 0.66 0.930142
Target:  5'- -aGGuGGUGGaGGCGGUuGACGAgGAUa -3'
miRNA:   3'- ggCCuCCGCUgCCGCUA-CUGCUgCUA- -5'
16142 3' -58 NC_004065.1 + 31889 0.66 0.930142
Target:  5'- aCCcauGGCGGCGGCGAUGACc----- -3'
miRNA:   3'- -GGccuCCGCUGCCGCUACUGcugcua -5'
16142 3' -58 NC_004065.1 + 154009 0.66 0.930142
Target:  5'- gUCGuGuucGCGGCGGCGgcGGCGACGu- -3'
miRNA:   3'- -GGC-Cuc-CGCUGCCGCuaCUGCUGCua -5'
16142 3' -58 NC_004065.1 + 48466 0.66 0.925134
Target:  5'- -aGGAGGUGACGGUGccGuaguCGccGCGAUa -3'
miRNA:   3'- ggCCUCCGCUGCCGCuaCu---GC--UGCUA- -5'
16142 3' -58 NC_004065.1 + 71561 0.66 0.925134
Target:  5'- uUCGGGGaGaGGCGcGUGAUGACGGCa-- -3'
miRNA:   3'- -GGCCUC-CgCUGC-CGCUACUGCUGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.