miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16142 5' -52.9 NC_004065.1 + 174666 0.66 0.997317
Target:  5'- gGGGUCGUCGccGgGACcUCGUucucCGUCGGg -3'
miRNA:   3'- -CCUAGCAGC--UgCUGcAGCA----GCAGCUg -5'
16142 5' -52.9 NC_004065.1 + 189018 0.66 0.997317
Target:  5'- cGGAggucaacgUGuUCGACGACGcCGUCuacggCGACg -3'
miRNA:   3'- -CCUa-------GC-AGCUGCUGCaGCAGca---GCUG- -5'
16142 5' -52.9 NC_004065.1 + 156053 0.66 0.997317
Target:  5'- uGGAcCG-CGACGACcUCGaccUCGcCGACg -3'
miRNA:   3'- -CCUaGCaGCUGCUGcAGC---AGCaGCUG- -5'
16142 5' -52.9 NC_004065.1 + 29902 0.66 0.997317
Target:  5'- gGGAUUGUUGACGGCccgcgcgaaGUCcUCGggcUCGAUa -3'
miRNA:   3'- -CCUAGCAGCUGCUG---------CAGcAGC---AGCUG- -5'
16142 5' -52.9 NC_004065.1 + 118239 0.66 0.997317
Target:  5'- cGGAgcCGUCGACGgacGCGUgGagcUCGcCGGCg -3'
miRNA:   3'- -CCUa-GCAGCUGC---UGCAgC---AGCaGCUG- -5'
16142 5' -52.9 NC_004065.1 + 77231 0.66 0.997317
Target:  5'- --cUCGUCGuCGGaggucaGUCGaCGUCGAUa -3'
miRNA:   3'- ccuAGCAGCuGCUg-----CAGCaGCAGCUG- -5'
16142 5' -52.9 NC_004065.1 + 22222 0.66 0.997317
Target:  5'- cGGUCG-CGAUGAcCGUCaUCGUgcCGGCg -3'
miRNA:   3'- cCUAGCaGCUGCU-GCAGcAGCA--GCUG- -5'
16142 5' -52.9 NC_004065.1 + 107710 0.66 0.997317
Target:  5'- cGGAaCGaccgUGugGAUGuUCGUCGcgUCGACg -3'
miRNA:   3'- -CCUaGCa---GCugCUGC-AGCAGC--AGCUG- -5'
16142 5' -52.9 NC_004065.1 + 79912 0.66 0.997317
Target:  5'- cGGAUCcUCGGCGAUcUCGUaGUUGGg -3'
miRNA:   3'- -CCUAGcAGCUGCUGcAGCAgCAGCUg -5'
16142 5' -52.9 NC_004065.1 + 65366 0.66 0.996862
Target:  5'- cGGAUCGaccUgGGCGACGcgCGcCG-CGACc -3'
miRNA:   3'- -CCUAGC---AgCUGCUGCa-GCaGCaGCUG- -5'
16142 5' -52.9 NC_004065.1 + 201997 0.66 0.996862
Target:  5'- aGGUCGUuggccgccaacgCGAUGGCGUCcUCcUCGGCg -3'
miRNA:   3'- cCUAGCA------------GCUGCUGCAGcAGcAGCUG- -5'
16142 5' -52.9 NC_004065.1 + 168694 0.66 0.996862
Target:  5'- cGGGUCGcCG-CGGCucUCGcCGUCGAg -3'
miRNA:   3'- -CCUAGCaGCuGCUGc-AGCaGCAGCUg -5'
16142 5' -52.9 NC_004065.1 + 35591 0.66 0.996862
Target:  5'- cGGuggCGUCGGCGGUGUCGgugCGggauccaCGGCg -3'
miRNA:   3'- -CCua-GCAGCUGCUGCAGCa--GCa------GCUG- -5'
16142 5' -52.9 NC_004065.1 + 183090 0.66 0.996862
Target:  5'- cGGGUCcaccUCGAUGuccagguCGUCGUCGU-GACc -3'
miRNA:   3'- -CCUAGc---AGCUGCu------GCAGCAGCAgCUG- -5'
16142 5' -52.9 NC_004065.1 + 131137 0.66 0.996862
Target:  5'- aGAcgCGUCGACGAgCG-CGUgGgCGACg -3'
miRNA:   3'- cCUa-GCAGCUGCU-GCaGCAgCaGCUG- -5'
16142 5' -52.9 NC_004065.1 + 151154 0.66 0.996862
Target:  5'- uGAUCGUCGGCGACcgcgagcuggCG-CGcCGGCc -3'
miRNA:   3'- cCUAGCAGCUGCUGca--------GCaGCaGCUG- -5'
16142 5' -52.9 NC_004065.1 + 45370 0.66 0.996862
Target:  5'- uGAUCGUCGACGAUcUCGacgCGUUu-- -3'
miRNA:   3'- cCUAGCAGCUGCUGcAGCa--GCAGcug -5'
16142 5' -52.9 NC_004065.1 + 120210 0.66 0.996345
Target:  5'- aGGAcggCGaCGAgGGCGUUcUCGUCGAa -3'
miRNA:   3'- -CCUa--GCaGCUgCUGCAGcAGCAGCUg -5'
16142 5' -52.9 NC_004065.1 + 115402 0.66 0.996345
Target:  5'- uGAUCGUcccCGGCGGgGUCGUagCGagGGCg -3'
miRNA:   3'- cCUAGCA---GCUGCUgCAGCA--GCagCUG- -5'
16142 5' -52.9 NC_004065.1 + 66629 0.66 0.996345
Target:  5'- --cUC-UCGGCGACaUCGUCGgcuUCGGCg -3'
miRNA:   3'- ccuAGcAGCUGCUGcAGCAGC---AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.