miRNA display CGI


Results 1 - 20 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16143 3' -59.3 NC_004065.1 + 27189 0.66 0.897252
Target:  5'- gUUCauaCCCGCGAgcgucaUGGCGGCGGUCguggucgGCa -3'
miRNA:   3'- aGAGa--GGGCGCU------GCUGCUGCCGGa------CG- -5'
16143 3' -59.3 NC_004065.1 + 202171 0.66 0.897252
Target:  5'- aUCUCgaccaguucgcCCCGCGGC-ACcACGGCCaGCc -3'
miRNA:   3'- -AGAGa----------GGGCGCUGcUGcUGCCGGaCG- -5'
16143 3' -59.3 NC_004065.1 + 162442 0.66 0.897252
Target:  5'- aUCUCgagccgaggccCCUGCGcuuCGGCGAaGGCCUcGCg -3'
miRNA:   3'- -AGAGa----------GGGCGCu--GCUGCUgCCGGA-CG- -5'
16143 3' -59.3 NC_004065.1 + 104155 0.66 0.897252
Target:  5'- --cCUUCCGCGGCGGUGuCGGUCgccGCu -3'
miRNA:   3'- agaGAGGGCGCUGCUGCuGCCGGa--CG- -5'
16143 3' -59.3 NC_004065.1 + 35618 0.66 0.897252
Target:  5'- ---aUCCacgGCGGCGGCGGCGGCggggaUGUc -3'
miRNA:   3'- agagAGGg--CGCUGCUGCUGCCGg----ACG- -5'
16143 3' -59.3 NC_004065.1 + 153587 0.66 0.897252
Target:  5'- -aUCUCCCGgGugGugGACcccgaccGCCUa- -3'
miRNA:   3'- agAGAGGGCgCugCugCUGc------CGGAcg -5'
16143 3' -59.3 NC_004065.1 + 36325 0.66 0.897252
Target:  5'- cUCUgcCUCCuCGCGGCcguGACGGCGcaucaauuaCCUGCg -3'
miRNA:   3'- -AGA--GAGG-GCGCUG---CUGCUGCc--------GGACG- -5'
16143 3' -59.3 NC_004065.1 + 153344 0.66 0.897252
Target:  5'- cUUCUUCgGgGACGGCGGC-GCCgacGCg -3'
miRNA:   3'- aGAGAGGgCgCUGCUGCUGcCGGa--CG- -5'
16143 3' -59.3 NC_004065.1 + 120228 0.66 0.891039
Target:  5'- uUCUCgucgaacgugCCCGCGGCGua-GCG-CCUGCc -3'
miRNA:   3'- -AGAGa---------GGGCGCUGCugcUGCcGGACG- -5'
16143 3' -59.3 NC_004065.1 + 188660 0.66 0.891039
Target:  5'- gCUCgagggCgCGCGGCgggaGACGACGGUCgucagGCc -3'
miRNA:   3'- aGAGa----GgGCGCUG----CUGCUGCCGGa----CG- -5'
16143 3' -59.3 NC_004065.1 + 24285 0.66 0.891039
Target:  5'- gCUCgcggcCCCGCGACaGAUGAUGGg--GCg -3'
miRNA:   3'- aGAGa----GGGCGCUG-CUGCUGCCggaCG- -5'
16143 3' -59.3 NC_004065.1 + 72021 0.66 0.891039
Target:  5'- --cUUCUCGaCGcUGAUGGCGGCgCUGCa -3'
miRNA:   3'- agaGAGGGC-GCuGCUGCUGCCG-GACG- -5'
16143 3' -59.3 NC_004065.1 + 1544 0.66 0.889135
Target:  5'- --cCUacaCGCGACgugguguguaagcuGACGGCGuGCCUGCg -3'
miRNA:   3'- agaGAgg-GCGCUG--------------CUGCUGC-CGGACG- -5'
16143 3' -59.3 NC_004065.1 + 120153 0.66 0.887214
Target:  5'- -----gCCGCGGCGACGcCGGuggcaccgcccggcaCCUGCg -3'
miRNA:   3'- agagagGGCGCUGCUGCuGCC---------------GGACG- -5'
16143 3' -59.3 NC_004065.1 + 83394 0.66 0.887214
Target:  5'- ----gCCCGUGACGGCGuucaccaccgaagacACGGCCccGCc -3'
miRNA:   3'- agagaGGGCGCUGCUGC---------------UGCCGGa-CG- -5'
16143 3' -59.3 NC_004065.1 + 57335 0.66 0.884624
Target:  5'- ----gCCgGCGACGACcGCGGCuCUGg -3'
miRNA:   3'- agagaGGgCGCUGCUGcUGCCG-GACg -5'
16143 3' -59.3 NC_004065.1 + 209379 0.66 0.884624
Target:  5'- aCUCcgaggCCUGCGACGGaGACGGCg--- -3'
miRNA:   3'- aGAGa----GGGCGCUGCUgCUGCCGgacg -5'
16143 3' -59.3 NC_004065.1 + 113303 0.66 0.884624
Target:  5'- cCUCaUCCCGCGACccagcgaGACGGC--GCa -3'
miRNA:   3'- aGAG-AGGGCGCUGcug----CUGCCGgaCG- -5'
16143 3' -59.3 NC_004065.1 + 68757 0.66 0.884624
Target:  5'- aCUCggacaUCGCGGCGGugcUGGCGGCCUuCa -3'
miRNA:   3'- aGAGag---GGCGCUGCU---GCUGCCGGAcG- -5'
16143 3' -59.3 NC_004065.1 + 63988 0.66 0.884624
Target:  5'- -aUCUCCgccgugcaacUGCaGACGGUGACGGCCUcccGCg -3'
miRNA:   3'- agAGAGG----------GCG-CUGCUGCUGCCGGA---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.