miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16143 5' -57.8 NC_004065.1 + 6171 0.66 0.920551
Target:  5'- gCCGGGccgGGCGGCCGagUaCGAGuuGUCGc -3'
miRNA:   3'- -GGCCC---CCGCCGGUagAaGCUC--UAGUu -5'
16143 5' -57.8 NC_004065.1 + 96771 0.66 0.920011
Target:  5'- gCGGaGGcggcaucGCGGCCGUCUUCGAcGAcUCu- -3'
miRNA:   3'- gGCC-CC-------CGCCGGUAGAAGCU-CU-AGuu -5'
16143 5' -57.8 NC_004065.1 + 33762 0.66 0.915051
Target:  5'- gUCGGaGGCcucgGGCCuccaUUCGAGAUCGAa -3'
miRNA:   3'- -GGCCcCCG----CCGGuag-AAGCUCUAGUU- -5'
16143 5' -57.8 NC_004065.1 + 120456 0.66 0.909331
Target:  5'- gCCaGGagacaGGCGGCCA-CcUCGAGGUCGc -3'
miRNA:   3'- -GGcCC-----CCGCCGGUaGaAGCUCUAGUu -5'
16143 5' -57.8 NC_004065.1 + 168692 0.66 0.908747
Target:  5'- cCCGGGucgccgcGGCucucGCCGUCgagugCGAGGUCGAc -3'
miRNA:   3'- -GGCCC-------CCGc---CGGUAGaa---GCUCUAGUU- -5'
16143 5' -57.8 NC_004065.1 + 45437 0.66 0.897237
Target:  5'- cCCGGGGGUGGgUugcgUUUCGgaagcaGGAUCGAg -3'
miRNA:   3'- -GGCCCCCGCCgGua--GAAGC------UCUAGUU- -5'
16143 5' -57.8 NC_004065.1 + 143272 0.66 0.890868
Target:  5'- gCGGGGGCGGCag-CUUCaAGGg--- -3'
miRNA:   3'- gGCCCCCGCCGguaGAAGcUCUaguu -5'
16143 5' -57.8 NC_004065.1 + 63052 0.66 0.890868
Target:  5'- gCUGGGGGCGGCgcaGUCgcaggagUCGccGGUCGc -3'
miRNA:   3'- -GGCCCCCGCCGg--UAGa------AGCu-CUAGUu -5'
16143 5' -57.8 NC_004065.1 + 35423 0.66 0.890868
Target:  5'- aCCGGGacgaCGGCUucGUCUUCGAGGUg-- -3'
miRNA:   3'- -GGCCCcc--GCCGG--UAGAAGCUCUAguu -5'
16143 5' -57.8 NC_004065.1 + 75769 0.67 0.884289
Target:  5'- cCCGGGggaggcggaGGCGGCgGUCggCGAGGggGAg -3'
miRNA:   3'- -GGCCC---------CCGCCGgUAGaaGCUCUagUU- -5'
16143 5' -57.8 NC_004065.1 + 211955 0.67 0.884289
Target:  5'- gCGGcGGucgcuGCcGCCAUCgUCGAGAUCAGa -3'
miRNA:   3'- gGCC-CC-----CGcCGGUAGaAGCUCUAGUU- -5'
16143 5' -57.8 NC_004065.1 + 141409 0.67 0.884289
Target:  5'- cCCGaGcuGGCGGCCAUCgcCGAGcUCAu -3'
miRNA:   3'- -GGC-Cc-CCGCCGGUAGaaGCUCuAGUu -5'
16143 5' -57.8 NC_004065.1 + 79504 0.67 0.884289
Target:  5'- gUGGGGGUGGuucCCAUCgcCGAGGUa-- -3'
miRNA:   3'- gGCCCCCGCC---GGUAGaaGCUCUAguu -5'
16143 5' -57.8 NC_004065.1 + 226410 0.67 0.877502
Target:  5'- gUCGGGacgaagaaucugGGCGGCCGUCUccaggagaguccUCGccGAUCGAg -3'
miRNA:   3'- -GGCCC------------CCGCCGGUAGA------------AGCu-CUAGUU- -5'
16143 5' -57.8 NC_004065.1 + 157112 0.67 0.848375
Target:  5'- gCCGGGGGC-GCCuUCagCGGGggCAu -3'
miRNA:   3'- -GGCCCCCGcCGGuAGaaGCUCuaGUu -5'
16143 5' -57.8 NC_004065.1 + 152043 0.68 0.824603
Target:  5'- cCCGGGGcggcucgccGCGGCCAgcgUC-UCGGGGcUCGAc -3'
miRNA:   3'- -GGCCCC---------CGCCGGU---AGaAGCUCU-AGUU- -5'
16143 5' -57.8 NC_004065.1 + 94173 0.68 0.824603
Target:  5'- gCCGuuGGCGGCCAUUUugUCGAGuuuUCGu -3'
miRNA:   3'- -GGCccCCGCCGGUAGA--AGCUCu--AGUu -5'
16143 5' -57.8 NC_004065.1 + 119835 0.69 0.802815
Target:  5'- aCGGGcGGCGGCgCGUCgcggccgccgcaGAGGUCGGg -3'
miRNA:   3'- gGCCC-CCGCCG-GUAGaag---------CUCUAGUU- -5'
16143 5' -57.8 NC_004065.1 + 190103 0.69 0.772883
Target:  5'- gUGGGGGCGGCUA-CUugUUGAGAagCAGg -3'
miRNA:   3'- gGCCCCCGCCGGUaGA--AGCUCUa-GUU- -5'
16143 5' -57.8 NC_004065.1 + 93486 0.7 0.726514
Target:  5'- aCGGuGGCGGCC-UCUUCGGGcgUGAc -3'
miRNA:   3'- gGCCcCCGCCGGuAGAAGCUCuaGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.