miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16144 3' -62.7 NC_004065.1 + 14993 0.66 0.755753
Target:  5'- cGUG-AGGGaGCUCgUGGgugACGGCCCUcuGGa -3'
miRNA:   3'- -CACgUCCC-CGAGgACC---UGCUGGGG--CC- -5'
16144 3' -62.7 NC_004065.1 + 51039 0.66 0.755753
Target:  5'- aUGCAcGGGGUgCuCUGGAUGgacugcgaACCCCGa -3'
miRNA:   3'- cACGU-CCCCGaG-GACCUGC--------UGGGGCc -5'
16144 3' -62.7 NC_004065.1 + 88703 0.66 0.755753
Target:  5'- -aGUAGGcGCUCUUGGGCagcGCCCUGa -3'
miRNA:   3'- caCGUCCcCGAGGACCUGc--UGGGGCc -5'
16144 3' -62.7 NC_004065.1 + 166220 0.66 0.755753
Target:  5'- -aGCGGGaGGUga-UGGAguuCGACCCCGa -3'
miRNA:   3'- caCGUCC-CCGaggACCU---GCUGGGGCc -5'
16144 3' -62.7 NC_004065.1 + 113541 0.66 0.746828
Target:  5'- -aGCAGGaaaGGCcugaCCUGGACGAUCaCCa- -3'
miRNA:   3'- caCGUCC---CCGa---GGACCUGCUGG-GGcc -5'
16144 3' -62.7 NC_004065.1 + 109489 0.66 0.746828
Target:  5'- -cGCAGGaGCUCCucaUGGGCGuCCUCa- -3'
miRNA:   3'- caCGUCCcCGAGG---ACCUGCuGGGGcc -5'
16144 3' -62.7 NC_004065.1 + 35228 0.66 0.737817
Target:  5'- cGUuCAGGGGCUcgacgaucgcCCUGcGCGACCCggucuCGGg -3'
miRNA:   3'- -CAcGUCCCCGA----------GGACcUGCUGGG-----GCC- -5'
16144 3' -62.7 NC_004065.1 + 153580 0.66 0.737817
Target:  5'- -cGUAGGuauCUCCcgggUGGugGACCCCGa -3'
miRNA:   3'- caCGUCCcc-GAGG----ACCugCUGGGGCc -5'
16144 3' -62.7 NC_004065.1 + 154114 0.66 0.737817
Target:  5'- -aGCAuGGGGaucgugugUCCacaugGGACGaucGCCCCGGg -3'
miRNA:   3'- caCGU-CCCCg-------AGGa----CCUGC---UGGGGCC- -5'
16144 3' -62.7 NC_004065.1 + 195321 0.66 0.728727
Target:  5'- -aGCucgAGGucuucguGCUCCUGGGCGGCgCCCGc -3'
miRNA:   3'- caCG---UCCc------CGAGGACCUGCUG-GGGCc -5'
16144 3' -62.7 NC_004065.1 + 67315 0.66 0.728727
Target:  5'- aGUGCcuGGGCaUCCUGGACu-UCCUGa -3'
miRNA:   3'- -CACGucCCCG-AGGACCUGcuGGGGCc -5'
16144 3' -62.7 NC_004065.1 + 33113 0.66 0.719566
Target:  5'- --uCAGGaGGacgccaugaUCCUGGugG-CCCCGGa -3'
miRNA:   3'- cacGUCC-CCg--------AGGACCugCuGGGGCC- -5'
16144 3' -62.7 NC_004065.1 + 107774 0.67 0.682348
Target:  5'- -gGCGGGGGgUUa-GGACGcCgCCCGGa -3'
miRNA:   3'- caCGUCCCCgAGgaCCUGCuG-GGGCC- -5'
16144 3' -62.7 NC_004065.1 + 131029 0.67 0.682348
Target:  5'- -aGUGGGGGUgCuCUGG-CGGCgCCGGg -3'
miRNA:   3'- caCGUCCCCGaG-GACCuGCUGgGGCC- -5'
16144 3' -62.7 NC_004065.1 + 201452 0.67 0.672938
Target:  5'- -gGUGGGGGCUCgagccGGACGcuCCCCGc -3'
miRNA:   3'- caCGUCCCCGAGga---CCUGCu-GGGGCc -5'
16144 3' -62.7 NC_004065.1 + 86998 0.67 0.672938
Target:  5'- -cGCAGGGaCUCCgaaACGACgCCGGu -3'
miRNA:   3'- caCGUCCCcGAGGaccUGCUGgGGCC- -5'
16144 3' -62.7 NC_004065.1 + 80387 0.67 0.672938
Target:  5'- cGUGCAGGG---CCUGccGACGGCgCCGGu -3'
miRNA:   3'- -CACGUCCCcgaGGAC--CUGCUGgGGCC- -5'
16144 3' -62.7 NC_004065.1 + 109640 0.67 0.654036
Target:  5'- -cGUcGaGGGCgUCCUGcGCGACUCCGGc -3'
miRNA:   3'- caCGuC-CCCG-AGGACcUGCUGGGGCC- -5'
16144 3' -62.7 NC_004065.1 + 159159 0.68 0.625588
Target:  5'- -aGCAGGGucGCcagCUGGGCGAacaUCCCGGg -3'
miRNA:   3'- caCGUCCC--CGag-GACCUGCU---GGGGCC- -5'
16144 3' -62.7 NC_004065.1 + 32182 0.68 0.594345
Target:  5'- gGUGCAcuccugccgccccuGGGa--CCUGGACGACCCCa- -3'
miRNA:   3'- -CACGU--------------CCCcgaGGACCUGCUGGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.