miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16144 5' -53.3 NC_004065.1 + 163412 0.66 0.991825
Target:  5'- uCGCCGAgagcgUCGgcaacgCCgcgGuGGCCGCCGCc -3'
miRNA:   3'- -GCGGCUaa---AGUa-----GGa--C-CUGGUGGUGu -5'
16144 5' -53.3 NC_004065.1 + 208607 0.66 0.991825
Target:  5'- gCGCCGucuacUUCAccgccauguUCUcGGACCugCACAa -3'
miRNA:   3'- -GCGGCua---AAGU---------AGGaCCUGGugGUGU- -5'
16144 5' -53.3 NC_004065.1 + 74616 0.66 0.991825
Target:  5'- gGCCGAgu---UCCcGGAaCCGCCGCc -3'
miRNA:   3'- gCGGCUaaaguAGGaCCU-GGUGGUGu -5'
16144 5' -53.3 NC_004065.1 + 141425 0.66 0.990685
Target:  5'- uCGCCGAgcUCAUggaGGGCCGCgACGa -3'
miRNA:   3'- -GCGGCUaaAGUAggaCCUGGUGgUGU- -5'
16144 5' -53.3 NC_004065.1 + 169189 0.66 0.990685
Target:  5'- aCGCCGAggaUCuUCUgGGAUCGCUACc -3'
miRNA:   3'- -GCGGCUaa-AGuAGGaCCUGGUGGUGu -5'
16144 5' -53.3 NC_004065.1 + 194384 0.66 0.990685
Target:  5'- gGCCGGUcUUCGUCCcuguggGGACagaGCgGCGg -3'
miRNA:   3'- gCGGCUA-AAGUAGGa-----CCUGg--UGgUGU- -5'
16144 5' -53.3 NC_004065.1 + 165903 0.66 0.989422
Target:  5'- uGCCgucgugguacgGAUcUUGUCCUaGGAUCACCACu -3'
miRNA:   3'- gCGG-----------CUAaAGUAGGA-CCUGGUGGUGu -5'
16144 5' -53.3 NC_004065.1 + 194445 0.66 0.989422
Target:  5'- cCGCCGAcgccaccgaUUCcgCCUGuGGCCGCCu-- -3'
miRNA:   3'- -GCGGCUa--------AAGuaGGAC-CUGGUGGugu -5'
16144 5' -53.3 NC_004065.1 + 46388 0.66 0.98803
Target:  5'- aGCCGGUc----CCUGGACUAcuCCACGa -3'
miRNA:   3'- gCGGCUAaaguaGGACCUGGU--GGUGU- -5'
16144 5' -53.3 NC_004065.1 + 29043 0.66 0.98803
Target:  5'- gCGUCGcgacccgUCAccacgcaccgaUCCUGGAgCCGCCGCGc -3'
miRNA:   3'- -GCGGCuaa----AGU-----------AGGACCU-GGUGGUGU- -5'
16144 5' -53.3 NC_004065.1 + 164571 0.66 0.9865
Target:  5'- gCGCCGAccgcUUCGcgcUCCaGaGCCACCACGg -3'
miRNA:   3'- -GCGGCUa---AAGU---AGGaCcUGGUGGUGU- -5'
16144 5' -53.3 NC_004065.1 + 125617 0.66 0.986339
Target:  5'- gGUCGAUgcgCG-CCUGGuagaagugcacgaGCCGCCGCGu -3'
miRNA:   3'- gCGGCUAaa-GUaGGACC-------------UGGUGGUGU- -5'
16144 5' -53.3 NC_004065.1 + 198931 0.66 0.984824
Target:  5'- cCGCCGGg--CGUUCU-GAUCGCCGCc -3'
miRNA:   3'- -GCGGCUaaaGUAGGAcCUGGUGGUGu -5'
16144 5' -53.3 NC_004065.1 + 130743 0.66 0.984824
Target:  5'- uGCCcc--UCGUCgUGGGCgACCGCGa -3'
miRNA:   3'- gCGGcuaaAGUAGgACCUGgUGGUGU- -5'
16144 5' -53.3 NC_004065.1 + 202758 0.66 0.984292
Target:  5'- cCGCCGGUcucUUCGUCCUcGucaucuucgauaucGAUCACCAUg -3'
miRNA:   3'- -GCGGCUA---AAGUAGGA-C--------------CUGGUGGUGu -5'
16144 5' -53.3 NC_004065.1 + 120162 0.67 0.982994
Target:  5'- aCGCCGGUggCAccgCCcGGcACCugCGCGa -3'
miRNA:   3'- -GCGGCUAaaGUa--GGaCC-UGGugGUGU- -5'
16144 5' -53.3 NC_004065.1 + 186398 0.67 0.982994
Target:  5'- gCGuuGGUggUUCGUgUCUGGAaCCGCCGCc -3'
miRNA:   3'- -GCggCUA--AAGUA-GGACCU-GGUGGUGu -5'
16144 5' -53.3 NC_004065.1 + 85053 0.67 0.981003
Target:  5'- aCGCCGcAgcUguUCCUGGACC-CCguGCAg -3'
miRNA:   3'- -GCGGC-UaaAguAGGACCUGGuGG--UGU- -5'
16144 5' -53.3 NC_004065.1 + 228859 0.67 0.981003
Target:  5'- gCGCCGAcgaCA-CaauggGGACCACCGCGg -3'
miRNA:   3'- -GCGGCUaaaGUaGga---CCUGGUGGUGU- -5'
16144 5' -53.3 NC_004065.1 + 118487 0.67 0.981003
Target:  5'- uGCCaGGUgcCGUCCcGGGCCgaguACCGCAu -3'
miRNA:   3'- gCGG-CUAaaGUAGGaCCUGG----UGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.