miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16144 5' -53.3 NC_004065.1 + 124817 0.67 0.980373
Target:  5'- cCGCCGGgcgUccacgaacagcggcUCcgCCUGGuCCAUCGCGa -3'
miRNA:   3'- -GCGGCUa--A--------------AGuaGGACCuGGUGGUGU- -5'
16144 5' -53.3 NC_004065.1 + 97993 0.67 0.978842
Target:  5'- uGuuGAUcagUUCGUCgUGGgucACCACCGCc -3'
miRNA:   3'- gCggCUA---AAGUAGgACC---UGGUGGUGu -5'
16144 5' -53.3 NC_004065.1 + 81258 0.67 0.978842
Target:  5'- uGCCuGUucUUCAUCCUGGA-CGCCGa- -3'
miRNA:   3'- gCGGcUA--AAGUAGGACCUgGUGGUgu -5'
16144 5' -53.3 NC_004065.1 + 77710 0.67 0.978842
Target:  5'- aGCCGucaUCGUCCccgccGGcACCGCCGCc -3'
miRNA:   3'- gCGGCuaaAGUAGGa----CC-UGGUGGUGu -5'
16144 5' -53.3 NC_004065.1 + 196887 0.67 0.976504
Target:  5'- gCGCCag-UUUAUCCagguccgGGGCCACCAgGa -3'
miRNA:   3'- -GCGGcuaAAGUAGGa------CCUGGUGGUgU- -5'
16144 5' -53.3 NC_004065.1 + 89095 0.67 0.976504
Target:  5'- aGCCGg---CGUCCUGGGCUcgggaacguACUACGc -3'
miRNA:   3'- gCGGCuaaaGUAGGACCUGG---------UGGUGU- -5'
16144 5' -53.3 NC_004065.1 + 141484 0.67 0.976504
Target:  5'- gGCCGcUUUCugccuggucaggGUCCUGGACgAgCGCGg -3'
miRNA:   3'- gCGGCuAAAG------------UAGGACCUGgUgGUGU- -5'
16144 5' -53.3 NC_004065.1 + 180314 0.68 0.97127
Target:  5'- uCGCCGGg--CAUCauggagaGGACCGCCGuCAu -3'
miRNA:   3'- -GCGGCUaaaGUAGga-----CCUGGUGGU-GU- -5'
16144 5' -53.3 NC_004065.1 + 106393 0.68 0.97127
Target:  5'- aCGCCGGUgUCGgccgaCCUGGAguucuuCCGCUACc -3'
miRNA:   3'- -GCGGCUAaAGUa----GGACCU------GGUGGUGu -5'
16144 5' -53.3 NC_004065.1 + 199827 0.68 0.97127
Target:  5'- cCGUCGGa--CAUCCUGcagaacGGCCACCACc -3'
miRNA:   3'- -GCGGCUaaaGUAGGAC------CUGGUGGUGu -5'
16144 5' -53.3 NC_004065.1 + 114235 0.68 0.97127
Target:  5'- gGCCGcaGUUUCcgugCCcgGGACCGCCAa- -3'
miRNA:   3'- gCGGC--UAAAGua--GGa-CCUGGUGGUgu -5'
16144 5' -53.3 NC_004065.1 + 173913 0.68 0.965246
Target:  5'- gCGCCGccgUCGUCCgGGACgGUCACGu -3'
miRNA:   3'- -GCGGCuaaAGUAGGaCCUGgUGGUGU- -5'
16144 5' -53.3 NC_004065.1 + 147493 0.68 0.965246
Target:  5'- uGCCGGcggggaacgUCAUCCgcauguucgGGGCCACCGa- -3'
miRNA:   3'- gCGGCUaa-------AGUAGGa--------CCUGGUGGUgu -5'
16144 5' -53.3 NC_004065.1 + 37637 0.68 0.961923
Target:  5'- gGCCac---CGUCCUGGACacgGCCGCAg -3'
miRNA:   3'- gCGGcuaaaGUAGGACCUGg--UGGUGU- -5'
16144 5' -53.3 NC_004065.1 + 67317 0.68 0.961923
Target:  5'- uGCCuGGg--CAUCCUGGACUuCCugAc -3'
miRNA:   3'- gCGG-CUaaaGUAGGACCUGGuGGugU- -5'
16144 5' -53.3 NC_004065.1 + 144544 0.69 0.95463
Target:  5'- aCGCCGAc-UCAggCCUcgaagauaacggGGACCACCAUc -3'
miRNA:   3'- -GCGGCUaaAGUa-GGA------------CCUGGUGGUGu -5'
16144 5' -53.3 NC_004065.1 + 147041 0.69 0.95463
Target:  5'- uGCCGAcgggCAUCUUGGACCGUCuCAa -3'
miRNA:   3'- gCGGCUaaa-GUAGGACCUGGUGGuGU- -5'
16144 5' -53.3 NC_004065.1 + 2763 0.69 0.950651
Target:  5'- gGUCGGUcUCAUCCgGGACgACCucuCAu -3'
miRNA:   3'- gCGGCUAaAGUAGGaCCUGgUGGu--GU- -5'
16144 5' -53.3 NC_004065.1 + 78337 0.69 0.946446
Target:  5'- uCGCaCGAUUUCAgccUCgUGGACC-CCAg- -3'
miRNA:   3'- -GCG-GCUAAAGU---AGgACCUGGuGGUgu -5'
16144 5' -53.3 NC_004065.1 + 70740 0.69 0.942011
Target:  5'- aCGCUGAacggcaUCAUCCgcucgGcGGCCACCACc -3'
miRNA:   3'- -GCGGCUaa----AGUAGGa----C-CUGGUGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.