miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16145 5' -56.9 NC_004065.1 + 124969 0.66 0.929111
Target:  5'- -cCugCACGAAGGgCGgccagAGGCGCGg -3'
miRNA:   3'- caGugGUGCUUCCgGCag---UCCGUGUa -5'
16145 5' -56.9 NC_004065.1 + 117572 0.66 0.923878
Target:  5'- cGUCAgCugGcucAGGCgguaaGUCGGGCGCGUu -3'
miRNA:   3'- -CAGUgGugCu--UCCGg----CAGUCCGUGUA- -5'
16145 5' -56.9 NC_004065.1 + 89083 0.66 0.923342
Target:  5'- --aACUGCGAGuGGUucugcggCGUCAGGCGCGUg -3'
miRNA:   3'- cagUGGUGCUU-CCG-------GCAGUCCGUGUA- -5'
16145 5' -56.9 NC_004065.1 + 197487 0.66 0.918415
Target:  5'- -cCGCCggcGCGAcgGGGCCGUCAucaggaugGGCGCc- -3'
miRNA:   3'- caGUGG---UGCU--UCCGGCAGU--------CCGUGua -5'
16145 5' -56.9 NC_004065.1 + 29119 0.66 0.918415
Target:  5'- -aCACUugGGAGGCCgGUCGcccaGCGCGa -3'
miRNA:   3'- caGUGGugCUUCCGG-CAGUc---CGUGUa -5'
16145 5' -56.9 NC_004065.1 + 147683 0.66 0.917856
Target:  5'- cGUCACCaaauccuccuucuACGcuacGGCC-UCGGGCACAUc -3'
miRNA:   3'- -CAGUGG-------------UGCuu--CCGGcAGUCCGUGUA- -5'
16145 5' -56.9 NC_004065.1 + 164596 0.66 0.912723
Target:  5'- -cCACCACGGccGCCGcucgCAGGCGgGg -3'
miRNA:   3'- caGUGGUGCUucCGGCa---GUCCGUgUa -5'
16145 5' -56.9 NC_004065.1 + 139593 0.66 0.912723
Target:  5'- gGUgGCCGCGgcGaucGCCGUUggcaAGGCGCAg -3'
miRNA:   3'- -CAgUGGUGCuuC---CGGCAG----UCCGUGUa -5'
16145 5' -56.9 NC_004065.1 + 124080 0.66 0.912723
Target:  5'- gGUCAgCGCGAAGcCCGggugCAGGCcCAUc -3'
miRNA:   3'- -CAGUgGUGCUUCcGGCa---GUCCGuGUA- -5'
16145 5' -56.9 NC_004065.1 + 21098 0.66 0.912723
Target:  5'- -cCGCCACGAcGGagagaCGUguGGCACu- -3'
miRNA:   3'- caGUGGUGCUuCCg----GCAguCCGUGua -5'
16145 5' -56.9 NC_004065.1 + 222656 0.66 0.906802
Target:  5'- cUCACCGCaGGuguGGGCgGUgaCAGGUACGUa -3'
miRNA:   3'- cAGUGGUG-CU---UCCGgCA--GUCCGUGUA- -5'
16145 5' -56.9 NC_004065.1 + 146599 0.66 0.906802
Target:  5'- gGUgGCCAUcGGGGCCGUC-GGCGgGg -3'
miRNA:   3'- -CAgUGGUGcUUCCGGCAGuCCGUgUa -5'
16145 5' -56.9 NC_004065.1 + 161799 0.66 0.906802
Target:  5'- --aACC-CGggGGCUGgauGGGCGCAUg -3'
miRNA:   3'- cagUGGuGCuuCCGGCag-UCCGUGUA- -5'
16145 5' -56.9 NC_004065.1 + 38176 0.66 0.906198
Target:  5'- aUCGCgGCGAuagucgcGGCCGUCAccacgacGGCACu- -3'
miRNA:   3'- cAGUGgUGCUu------CCGGCAGU-------CCGUGua -5'
16145 5' -56.9 NC_004065.1 + 202178 0.66 0.905591
Target:  5'- -gCGCCGCGGugauguucaggcGGCCGagcacccgCAGGCACAUc -3'
miRNA:   3'- caGUGGUGCUu-----------CCGGCa-------GUCCGUGUA- -5'
16145 5' -56.9 NC_004065.1 + 128448 0.66 0.900656
Target:  5'- -gCGCgGCGGAGGCgucCG-CGGGCGCGa -3'
miRNA:   3'- caGUGgUGCUUCCG---GCaGUCCGUGUa -5'
16145 5' -56.9 NC_004065.1 + 159724 0.66 0.900656
Target:  5'- --gACCACGGagaugauaccagGGGCCaGUCAgcuGGCACAa -3'
miRNA:   3'- cagUGGUGCU------------UCCGG-CAGU---CCGUGUa -5'
16145 5' -56.9 NC_004065.1 + 200017 0.66 0.900656
Target:  5'- -gCACCGC---GGUCGUCAGGgGCAg -3'
miRNA:   3'- caGUGGUGcuuCCGGCAGUCCgUGUa -5'
16145 5' -56.9 NC_004065.1 + 91186 0.66 0.900656
Target:  5'- --gGCCGCgGAAGcGCCGUCGGcguGCGCGg -3'
miRNA:   3'- cagUGGUG-CUUC-CGGCAGUC---CGUGUa -5'
16145 5' -56.9 NC_004065.1 + 612 0.67 0.894287
Target:  5'- aGUUACgCGCucAGGCuCGUCAGGCgGCGg -3'
miRNA:   3'- -CAGUG-GUGcuUCCG-GCAGUCCG-UGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.