miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16146 5' -57.9 NC_004065.1 + 174917 0.66 0.926767
Target:  5'- cUCGgcgcCGCCGcGGGCGCCAgGAUUa-- -3'
miRNA:   3'- -AGUa---GCGGCuUCCGCGGUgCUGGcuc -5'
16146 5' -57.9 NC_004065.1 + 37881 0.66 0.926767
Target:  5'- gUCAgCGCgGAAGGcCGUCugGCGGCCGu- -3'
miRNA:   3'- -AGUaGCGgCUUCC-GCGG--UGCUGGCuc -5'
16146 5' -57.9 NC_004065.1 + 77045 0.66 0.926767
Target:  5'- ---gCGCgGAucGGCGacgagaaCACGGCCGAGa -3'
miRNA:   3'- aguaGCGgCUu-CCGCg------GUGCUGGCUC- -5'
16146 5' -57.9 NC_004065.1 + 162054 0.66 0.926767
Target:  5'- -gAUUGCCGcgaaCGCCACGACCGc- -3'
miRNA:   3'- agUAGCGGCuuccGCGGUGCUGGCuc -5'
16146 5' -57.9 NC_004065.1 + 205741 0.66 0.921577
Target:  5'- aUCAUCuGUCGcGGG-GCCGCGAgCCGuGa -3'
miRNA:   3'- -AGUAG-CGGCuUCCgCGGUGCU-GGCuC- -5'
16146 5' -57.9 NC_004065.1 + 77492 0.66 0.921577
Target:  5'- ---cUGCCGAAgaagccGGCGCCGgCGGagcCCGAGg -3'
miRNA:   3'- aguaGCGGCUU------CCGCGGU-GCU---GGCUC- -5'
16146 5' -57.9 NC_004065.1 + 205205 0.66 0.921577
Target:  5'- aCGUCGCCGggGGUaCguUGAUCGuAGc -3'
miRNA:   3'- aGUAGCGGCuuCCGcGguGCUGGC-UC- -5'
16146 5' -57.9 NC_004065.1 + 77534 0.66 0.921577
Target:  5'- ---cUGCUGGAcaaguaccGGCG-CGCGACCGAGg -3'
miRNA:   3'- aguaGCGGCUU--------CCGCgGUGCUGGCUC- -5'
16146 5' -57.9 NC_004065.1 + 63830 0.66 0.921577
Target:  5'- uUCAUCggGCCGAAGcugcugacguuCGCCAUGGCCGc- -3'
miRNA:   3'- -AGUAG--CGGCUUCc----------GCGGUGCUGGCuc -5'
16146 5' -57.9 NC_004065.1 + 140145 0.66 0.921577
Target:  5'- uUCGggGCCGAcgauGGCGCCGuCGACaaCGAu -3'
miRNA:   3'- -AGUagCGGCUu---CCGCGGU-GCUG--GCUc -5'
16146 5' -57.9 NC_004065.1 + 91457 0.66 0.921577
Target:  5'- ---aCGCCGAAgcGGCGCCugGcAUCGu- -3'
miRNA:   3'- aguaGCGGCUU--CCGCGGugC-UGGCuc -5'
16146 5' -57.9 NC_004065.1 + 141653 0.66 0.921577
Target:  5'- ---gCGgUGgcGGUGCCGCGGCCGcGGa -3'
miRNA:   3'- aguaGCgGCuuCCGCGGUGCUGGC-UC- -5'
16146 5' -57.9 NC_004065.1 + 176392 0.66 0.921047
Target:  5'- cCAUCuGCuCGcaccacggaugauAGGGCGCCGCGcCCGGu -3'
miRNA:   3'- aGUAG-CG-GC-------------UUCCGCGGUGCuGGCUc -5'
16146 5' -57.9 NC_004065.1 + 24904 0.66 0.920513
Target:  5'- cUC-UCGagagcuuCCGGAGGCGCCauaucgaGCGAUCGAc -3'
miRNA:   3'- -AGuAGC-------GGCUUCCGCGG-------UGCUGGCUc -5'
16146 5' -57.9 NC_004065.1 + 33411 0.66 0.91617
Target:  5'- cCGUCGaacCUGAAGGCcuGCCugGAC-GAGa -3'
miRNA:   3'- aGUAGC---GGCUUCCG--CGGugCUGgCUC- -5'
16146 5' -57.9 NC_004065.1 + 23501 0.66 0.91617
Target:  5'- aCGUUcaaGCCGggGuaGCGCCuCGAUCGAc -3'
miRNA:   3'- aGUAG---CGGCuuC--CGCGGuGCUGGCUc -5'
16146 5' -57.9 NC_004065.1 + 140434 0.66 0.91617
Target:  5'- aUCugaGCCGc-GGCuguuGCCGCGGCCGAa -3'
miRNA:   3'- -AGuagCGGCuuCCG----CGGUGCUGGCUc -5'
16146 5' -57.9 NC_004065.1 + 99485 0.66 0.91617
Target:  5'- cCGUCGCUGucGGCGCaugCGCGGUCGGu -3'
miRNA:   3'- aGUAGCGGCuuCCGCG---GUGCUGGCUc -5'
16146 5' -57.9 NC_004065.1 + 66574 0.66 0.91617
Target:  5'- cUCGUCGCUGgcGaGCGCCugccgcACGAUgGAc -3'
miRNA:   3'- -AGUAGCGGCuuC-CGCGG------UGCUGgCUc -5'
16146 5' -57.9 NC_004065.1 + 77128 0.66 0.91617
Target:  5'- aCAUCGUCaGAcGGgGCUGCGGuuGGGg -3'
miRNA:   3'- aGUAGCGG-CUuCCgCGGUGCUggCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.