miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16147 3' -61.4 NC_004065.1 + 100915 0.66 0.776291
Target:  5'- -cGUCCGGCAgguucuugucguACGCCGUGU--GCUCg -3'
miRNA:   3'- cuCGGGCCGU------------UGCGGCACGugUGGGa -5'
16147 3' -61.4 NC_004065.1 + 115077 0.66 0.776291
Target:  5'- gGAGgCCGGCGGCGCCGacUGaugaugauCACCg- -3'
miRNA:   3'- -CUCgGGCCGUUGCGGC--ACgu------GUGGga -5'
16147 3' -61.4 NC_004065.1 + 149637 0.66 0.776291
Target:  5'- ---aCCGGCGcCGUCG-GCAgGCCCUg -3'
miRNA:   3'- cucgGGCCGUuGCGGCaCGUgUGGGA- -5'
16147 3' -61.4 NC_004065.1 + 116593 0.66 0.776291
Target:  5'- cGGGCCCcccGGC--CGCCGcucUGCGCAgcuCCCUg -3'
miRNA:   3'- -CUCGGG---CCGuuGCGGC---ACGUGU---GGGA- -5'
16147 3' -61.4 NC_004065.1 + 110019 0.66 0.776291
Target:  5'- cAG-CCGGCAccgccCGCCGUGUucuucCACCCg -3'
miRNA:   3'- cUCgGGCCGUu----GCGGCACGu----GUGGGa -5'
16147 3' -61.4 NC_004065.1 + 3795 0.66 0.776291
Target:  5'- cAGCCUGGCGuguGCCGUGUucaACUCg -3'
miRNA:   3'- cUCGGGCCGUug-CGGCACGug-UGGGa -5'
16147 3' -61.4 NC_004065.1 + 198646 0.66 0.773639
Target:  5'- -cGCCaccaGGUgcagcgugucguccGACGCCGUGUacacguACACCCg -3'
miRNA:   3'- cuCGGg---CCG--------------UUGCGGCACG------UGUGGGa -5'
16147 3' -61.4 NC_004065.1 + 30490 0.66 0.767411
Target:  5'- -cGCCCGGCuggaGGCGCCcggcUGCGCGCa-- -3'
miRNA:   3'- cuCGGGCCG----UUGCGGc---ACGUGUGgga -5'
16147 3' -61.4 NC_004065.1 + 84226 0.66 0.767411
Target:  5'- aAGUCCGGCccGACGUgcaugaggaucUGUGCgaGCGCCCg -3'
miRNA:   3'- cUCGGGCCG--UUGCG-----------GCACG--UGUGGGa -5'
16147 3' -61.4 NC_004065.1 + 105275 0.66 0.767411
Target:  5'- -uGCCUGGUgccCGCCGUGCugAacaaCCa -3'
miRNA:   3'- cuCGGGCCGuu-GCGGCACGugUg---GGa -5'
16147 3' -61.4 NC_004065.1 + 32391 0.66 0.767411
Target:  5'- uGAGCCCGGUGcCGCCGacguacuucgcGUugACCUg -3'
miRNA:   3'- -CUCGGGCCGUuGCGGCa----------CGugUGGGa -5'
16147 3' -61.4 NC_004065.1 + 44516 0.66 0.764725
Target:  5'- -cGUCCGGCGGCGCgauguuaccggggaCGguggcgGCGCugCCUc -3'
miRNA:   3'- cuCGGGCCGUUGCG--------------GCa-----CGUGugGGA- -5'
16147 3' -61.4 NC_004065.1 + 83193 0.66 0.759326
Target:  5'- --uCCCGGCGGCccgcucucgagucccCCGUGCGCGCCg- -3'
miRNA:   3'- cucGGGCCGUUGc--------------GGCACGUGUGGga -5'
16147 3' -61.4 NC_004065.1 + 161352 0.66 0.758423
Target:  5'- -cGCCUGGCAcgacucguACGCCGacugcgcGUACGCCUc -3'
miRNA:   3'- cuCGGGCCGU--------UGCGGCa------CGUGUGGGa -5'
16147 3' -61.4 NC_004065.1 + 101875 0.66 0.758423
Target:  5'- cGGCCCGGCGagcguaACGCCa-GCAUgACCUUa -3'
miRNA:   3'- cUCGGGCCGU------UGCGGcaCGUG-UGGGA- -5'
16147 3' -61.4 NC_004065.1 + 25016 0.66 0.758423
Target:  5'- uGGGCgCGGCAagGgGCCGUGUcCcgACCCUc -3'
miRNA:   3'- -CUCGgGCCGU--UgCGGCACGuG--UGGGA- -5'
16147 3' -61.4 NC_004065.1 + 61941 0.66 0.749335
Target:  5'- gGAGCCCGGCGAUGC---GCAgAUCUUc -3'
miRNA:   3'- -CUCGGGCCGUUGCGgcaCGUgUGGGA- -5'
16147 3' -61.4 NC_004065.1 + 130082 0.66 0.749335
Target:  5'- uGGUCgacuaCGGCGAUGCCGUucgGCGCccGCCCUu -3'
miRNA:   3'- cUCGG-----GCCGUUGCGGCA---CGUG--UGGGA- -5'
16147 3' -61.4 NC_004065.1 + 152813 0.66 0.740154
Target:  5'- cAGCgUGGCcauCGCCGUGCgggGCGCCg- -3'
miRNA:   3'- cUCGgGCCGuu-GCGGCACG---UGUGGga -5'
16147 3' -61.4 NC_004065.1 + 106121 0.66 0.740154
Target:  5'- uGGGCCUgggguacggGGCGACGaCGUGCacggcGCACCUg -3'
miRNA:   3'- -CUCGGG---------CCGUUGCgGCACG-----UGUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.