miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16147 5' -49.8 NC_004065.1 + 61014 0.66 0.999506
Target:  5'- -gAGGAUGUgcagagaggccACGAUGUCG-CCUccgagguccgccGCGCu -3'
miRNA:   3'- agUCCUACA-----------UGCUAUAGCuGGA------------CGUG- -5'
16147 5' -49.8 NC_004065.1 + 122467 0.66 0.999506
Target:  5'- gUCAGGGUGgcguccCGGUAgcgcaCGACCcGCAg -3'
miRNA:   3'- -AGUCCUACau----GCUAUa----GCUGGaCGUg -5'
16147 5' -49.8 NC_004065.1 + 129866 0.66 0.999389
Target:  5'- gUCAGGAgGUGu----UCGACCUGUGCc -3'
miRNA:   3'- -AGUCCUaCAUgcuauAGCUGGACGUG- -5'
16147 5' -49.8 NC_004065.1 + 97224 0.66 0.999389
Target:  5'- -gGGGAUGUuCGggGUCGcguCCgGCGCa -3'
miRNA:   3'- agUCCUACAuGCuaUAGCu--GGaCGUG- -5'
16147 5' -49.8 NC_004065.1 + 66077 0.66 0.999248
Target:  5'- -gAGGAccugGCGAUcgaGUCGuuCCUGCACg -3'
miRNA:   3'- agUCCUaca-UGCUA---UAGCu-GGACGUG- -5'
16147 5' -49.8 NC_004065.1 + 195956 0.66 0.999081
Target:  5'- cUCAGGAacUACGAgca-GGCCUcGCGCu -3'
miRNA:   3'- -AGUCCUacAUGCUauagCUGGA-CGUG- -5'
16147 5' -49.8 NC_004065.1 + 174213 0.66 0.999081
Target:  5'- cCAGGAgcu-CGAUAgaCGACCUGguCg -3'
miRNA:   3'- aGUCCUacauGCUAUa-GCUGGACguG- -5'
16147 5' -49.8 NC_004065.1 + 77744 0.67 0.998883
Target:  5'- gCAGGAcUGgGCGAgcuccUCGACCUGgAUg -3'
miRNA:   3'- aGUCCU-ACaUGCUau---AGCUGGACgUG- -5'
16147 5' -49.8 NC_004065.1 + 134697 0.67 0.998883
Target:  5'- cCGGGA-GUuCGAg---GGCCUGCACa -3'
miRNA:   3'- aGUCCUaCAuGCUauagCUGGACGUG- -5'
16147 5' -49.8 NC_004065.1 + 137999 0.67 0.998883
Target:  5'- cUCcGGGUGUACGGUcugauAUCG-CUUGCGa -3'
miRNA:   3'- -AGuCCUACAUGCUA-----UAGCuGGACGUg -5'
16147 5' -49.8 NC_004065.1 + 121458 0.67 0.998649
Target:  5'- --cGGAUGgugcCGGUGUCGGCgCaGCGCa -3'
miRNA:   3'- aguCCUACau--GCUAUAGCUG-GaCGUG- -5'
16147 5' -49.8 NC_004065.1 + 174130 0.67 0.998649
Target:  5'- cCGuGAgagGUGCGGcAUCGGCCUGgACg -3'
miRNA:   3'- aGUcCUa--CAUGCUaUAGCUGGACgUG- -5'
16147 5' -49.8 NC_004065.1 + 104075 0.67 0.99849
Target:  5'- gCGGGAcGU-CGAgcucaccuucuacuuUccgGUCGGCCUGCACg -3'
miRNA:   3'- aGUCCUaCAuGCU---------------A---UAGCUGGACGUG- -5'
16147 5' -49.8 NC_004065.1 + 105902 0.67 0.998375
Target:  5'- aCAaGAUGUcccCGGUGUCGAUCgcgGCGCu -3'
miRNA:   3'- aGUcCUACAu--GCUAUAGCUGGa--CGUG- -5'
16147 5' -49.8 NC_004065.1 + 206837 0.67 0.998375
Target:  5'- gCGGGAUcgGCGGggcCGACCUGCuCg -3'
miRNA:   3'- aGUCCUAcaUGCUauaGCUGGACGuG- -5'
16147 5' -49.8 NC_004065.1 + 196387 0.67 0.998056
Target:  5'- cCGGcucGUcaACGAgcucAUCGACCUGCACg -3'
miRNA:   3'- aGUCcuaCA--UGCUa---UAGCUGGACGUG- -5'
16147 5' -49.8 NC_004065.1 + 124178 0.67 0.998056
Target:  5'- cCAGGGUGUGCGcgca-GGCCgccgaguaGCACg -3'
miRNA:   3'- aGUCCUACAUGCuauagCUGGa-------CGUG- -5'
16147 5' -49.8 NC_004065.1 + 165350 0.67 0.998056
Target:  5'- aUCugguGGAUGU-CGGUGgugcagaucUCGGCCaGCACg -3'
miRNA:   3'- -AGu---CCUACAuGCUAU---------AGCUGGaCGUG- -5'
16147 5' -49.8 NC_004065.1 + 96053 0.68 0.997258
Target:  5'- aUCGGGGaGUcACaGAUAUCGACg-GCGCg -3'
miRNA:   3'- -AGUCCUaCA-UG-CUAUAGCUGgaCGUG- -5'
16147 5' -49.8 NC_004065.1 + 30665 0.68 0.997212
Target:  5'- gCAGGGaucACGAUauaugcuGUCGaACCUGCGCa -3'
miRNA:   3'- aGUCCUacaUGCUA-------UAGC-UGGACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.