miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 3' -57.4 NC_004065.1 + 196199 0.66 0.935722
Target:  5'- cACGGCGuGguugauggccAGCUUguccgCGUCGuCCCACGUCc -3'
miRNA:   3'- -UGCUGCuC----------UCGAG-----GCAGC-GGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 42712 0.66 0.935722
Target:  5'- uCGGCGAGcGCUCCucCGCCC-CAg- -3'
miRNA:   3'- uGCUGCUCuCGAGGcaGCGGGuGUag -5'
16148 3' -57.4 NC_004065.1 + 212887 0.66 0.935722
Target:  5'- cAUGACGGGAGUUgCCaggGUCGUCgAgGUCg -3'
miRNA:   3'- -UGCUGCUCUCGA-GG---CAGCGGgUgUAG- -5'
16148 3' -57.4 NC_004065.1 + 171884 0.66 0.930886
Target:  5'- gGCGACGA---UUUCGcCGCCUGCGUCg -3'
miRNA:   3'- -UGCUGCUcucGAGGCaGCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 144005 0.66 0.925829
Target:  5'- gGCGcacauuCGAGAGCucguccugUCCGUCGCaCUAUAUa -3'
miRNA:   3'- -UGCu-----GCUCUCG--------AGGCAGCG-GGUGUAg -5'
16148 3' -57.4 NC_004065.1 + 91672 0.66 0.925829
Target:  5'- gACGACGGGGGUcgCCuuGUCGCagagCgACAUCg -3'
miRNA:   3'- -UGCUGCUCUCGa-GG--CAGCG----GgUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 111112 0.66 0.925829
Target:  5'- uACGuCGccAGCUUCGUCGCCaucuggcucgugCGCGUCg -3'
miRNA:   3'- -UGCuGCucUCGAGGCAGCGG------------GUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 124255 0.66 0.925829
Target:  5'- gGCGacaGCGGGaAGCcgCCGUCGCaCCGCu-- -3'
miRNA:   3'- -UGC---UGCUC-UCGa-GGCAGCG-GGUGuag -5'
16148 3' -57.4 NC_004065.1 + 205904 0.66 0.925829
Target:  5'- uUGACGGauGGGCcgCCGagGCCgACGUCg -3'
miRNA:   3'- uGCUGCU--CUCGa-GGCagCGGgUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 201448 0.66 0.925829
Target:  5'- -aGACGAGGGUgucCCGUCGaCgCGCAc- -3'
miRNA:   3'- ugCUGCUCUCGa--GGCAGC-GgGUGUag -5'
16148 3' -57.4 NC_004065.1 + 92197 0.66 0.920551
Target:  5'- cGCGAaaCGAGAcGCgggCCGcgaacagGCCCACAUCc -3'
miRNA:   3'- -UGCU--GCUCU-CGa--GGCag-----CGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 174455 0.66 0.920551
Target:  5'- gACGGCGGGA---CCGUCuaCUACGUCg -3'
miRNA:   3'- -UGCUGCUCUcgaGGCAGcgGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 195314 0.66 0.920011
Target:  5'- aACGAgaagcuCGAGGucuucguGCUCCuGggcggCGCCCGCGUCu -3'
miRNA:   3'- -UGCU------GCUCU-------CGAGG-Ca----GCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 41770 0.66 0.915051
Target:  5'- gACGACGc-AGCUgCUGUCGaaCCGCAUCu -3'
miRNA:   3'- -UGCUGCucUCGA-GGCAGCg-GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 52113 0.66 0.915051
Target:  5'- cCGACGuAGAccGCUgaaCCGUCGUCCguaACGUCu -3'
miRNA:   3'- uGCUGC-UCU--CGA---GGCAGCGGG---UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 200749 0.66 0.909331
Target:  5'- uCGACGAGgcGGCUCacgcgucgGUCGCUCucuCGUCg -3'
miRNA:   3'- uGCUGCUC--UCGAGg-------CAGCGGGu--GUAG- -5'
16148 3' -57.4 NC_004065.1 + 88066 0.66 0.909331
Target:  5'- cCGGaGGGAGgaCCGUCGUcgCCAUAUCu -3'
miRNA:   3'- uGCUgCUCUCgaGGCAGCG--GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 188957 0.66 0.909331
Target:  5'- uACGACaAGcucuucGGCUUCGUCGCCgCGCGg- -3'
miRNA:   3'- -UGCUGcUC------UCGAGGCAGCGG-GUGUag -5'
16148 3' -57.4 NC_004065.1 + 140028 0.67 0.903392
Target:  5'- aGCGACG---GCUCCGUCGgguucgcuCCCGuCGUCg -3'
miRNA:   3'- -UGCUGCucuCGAGGCAGC--------GGGU-GUAG- -5'
16148 3' -57.4 NC_004065.1 + 140806 0.67 0.903392
Target:  5'- uACGACGAGAGCgaCGUgGUggACAUCc -3'
miRNA:   3'- -UGCUGCUCUCGagGCAgCGggUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.