Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16148 | 3' | -57.4 | NC_004065.1 | + | 196199 | 0.66 | 0.935722 |
Target: 5'- cACGGCGuGguugauggccAGCUUguccgCGUCGuCCCACGUCc -3' miRNA: 3'- -UGCUGCuC----------UCGAG-----GCAGC-GGGUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 111112 | 0.66 | 0.925829 |
Target: 5'- uACGuCGccAGCUUCGUCGCCaucuggcucgugCGCGUCg -3' miRNA: 3'- -UGCuGCucUCGAGGCAGCGG------------GUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 124255 | 0.66 | 0.925829 |
Target: 5'- gGCGacaGCGGGaAGCcgCCGUCGCaCCGCu-- -3' miRNA: 3'- -UGC---UGCUC-UCGa-GGCAGCG-GGUGuag -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 42712 | 0.66 | 0.935722 |
Target: 5'- uCGGCGAGcGCUCCucCGCCC-CAg- -3' miRNA: 3'- uGCUGCUCuCGAGGcaGCGGGuGUag -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 92197 | 0.66 | 0.920551 |
Target: 5'- cGCGAaaCGAGAcGCgggCCGcgaacagGCCCACAUCc -3' miRNA: 3'- -UGCU--GCUCU-CGa--GGCag-----CGGGUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 88066 | 0.66 | 0.909331 |
Target: 5'- cCGGaGGGAGgaCCGUCGUcgCCAUAUCu -3' miRNA: 3'- uGCUgCUCUCgaGGCAGCG--GGUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 195314 | 0.66 | 0.920011 |
Target: 5'- aACGAgaagcuCGAGGucuucguGCUCCuGggcggCGCCCGCGUCu -3' miRNA: 3'- -UGCU------GCUCU-------CGAGG-Ca----GCGGGUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 201448 | 0.66 | 0.925829 |
Target: 5'- -aGACGAGGGUgucCCGUCGaCgCGCAc- -3' miRNA: 3'- ugCUGCUCUCGa--GGCAGC-GgGUGUag -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 205904 | 0.66 | 0.925829 |
Target: 5'- uUGACGGauGGGCcgCCGagGCCgACGUCg -3' miRNA: 3'- uGCUGCU--CUCGa-GGCagCGGgUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 91672 | 0.66 | 0.925829 |
Target: 5'- gACGACGGGGGUcgCCuuGUCGCagagCgACAUCg -3' miRNA: 3'- -UGCUGCUCUCGa-GG--CAGCG----GgUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 52113 | 0.66 | 0.915051 |
Target: 5'- cCGACGuAGAccGCUgaaCCGUCGUCCguaACGUCu -3' miRNA: 3'- uGCUGC-UCU--CGA---GGCAGCGGG---UGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 41770 | 0.66 | 0.915051 |
Target: 5'- gACGACGc-AGCUgCUGUCGaaCCGCAUCu -3' miRNA: 3'- -UGCUGCucUCGA-GGCAGCg-GGUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 144005 | 0.66 | 0.925829 |
Target: 5'- gGCGcacauuCGAGAGCucguccugUCCGUCGCaCUAUAUa -3' miRNA: 3'- -UGCu-----GCUCUCG--------AGGCAGCG-GGUGUAg -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 174455 | 0.66 | 0.920551 |
Target: 5'- gACGGCGGGA---CCGUCuaCUACGUCg -3' miRNA: 3'- -UGCUGCUCUcgaGGCAGcgGGUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 188957 | 0.66 | 0.909331 |
Target: 5'- uACGACaAGcucuucGGCUUCGUCGCCgCGCGg- -3' miRNA: 3'- -UGCUGcUC------UCGAGGCAGCGG-GUGUag -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 212887 | 0.66 | 0.935722 |
Target: 5'- cAUGACGGGAGUUgCCaggGUCGUCgAgGUCg -3' miRNA: 3'- -UGCUGCUCUCGA-GG---CAGCGGgUgUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 200749 | 0.66 | 0.909331 |
Target: 5'- uCGACGAGgcGGCUCacgcgucgGUCGCUCucuCGUCg -3' miRNA: 3'- uGCUGCUC--UCGAGg-------CAGCGGGu--GUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 171884 | 0.66 | 0.930886 |
Target: 5'- gGCGACGA---UUUCGcCGCCUGCGUCg -3' miRNA: 3'- -UGCUGCUcucGAGGCaGCGGGUGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 195406 | 0.67 | 0.902179 |
Target: 5'- cACGGCGAGccguacacguacGCUCCcgccgcGUCGCCguCGUCg -3' miRNA: 3'- -UGCUGCUCu-----------CGAGG------CAGCGGguGUAG- -5' |
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16148 | 3' | -57.4 | NC_004065.1 | + | 168941 | 0.67 | 0.890868 |
Target: 5'- cGCGACGcAGAGCagCG-CGCCgACAc- -3' miRNA: 3'- -UGCUGC-UCUCGagGCaGCGGgUGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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