miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16148 3' -57.4 NC_004065.1 + 140028 0.67 0.903392
Target:  5'- aGCGACG---GCUCCGUCGgguucgcuCCCGuCGUCg -3'
miRNA:   3'- -UGCUGCucuCGAGGCAGC--------GGGU-GUAG- -5'
16148 3' -57.4 NC_004065.1 + 109629 0.67 0.897237
Target:  5'- cGCGGCGAagGAGCagCGUCcGCCCG-AUCc -3'
miRNA:   3'- -UGCUGCU--CUCGagGCAG-CGGGUgUAG- -5'
16148 3' -57.4 NC_004065.1 + 16728 0.67 0.890868
Target:  5'- cCGACGAccGaaCCGUCGUCCACgGUCa -3'
miRNA:   3'- uGCUGCUcuCgaGGCAGCGGGUG-UAG- -5'
16148 3' -57.4 NC_004065.1 + 67804 0.67 0.888916
Target:  5'- uACGGCGuacGGAGCUCCGUUcguuucuaacgguaGCUCGUGUCg -3'
miRNA:   3'- -UGCUGC---UCUCGAGGCAG--------------CGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 167949 0.67 0.897237
Target:  5'- aGCGuCGGcGAGCUUCGUCggcuuGUCCACgAUCg -3'
miRNA:   3'- -UGCuGCU-CUCGAGGCAG-----CGGGUG-UAG- -5'
16148 3' -57.4 NC_004065.1 + 199343 0.67 0.897237
Target:  5'- cGCGACGGaccAGCUCC-UUGCucuCCGCGUCg -3'
miRNA:   3'- -UGCUGCUc--UCGAGGcAGCG---GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 122115 0.67 0.897237
Target:  5'- cGCGGCGAGAGaggUCCuGUCGa--GCGUCg -3'
miRNA:   3'- -UGCUGCUCUCg--AGG-CAGCgggUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 169563 0.67 0.869802
Target:  5'- cGCGGCagucGAGAGCUCCGUCGacgugguCCUcgGUCu -3'
miRNA:   3'- -UGCUG----CUCUCGAGGCAGC-------GGGugUAG- -5'
16148 3' -57.4 NC_004065.1 + 173907 0.67 0.870512
Target:  5'- -aGGCGAGcGCcgCCGUCGUCCgggacggucACGUCu -3'
miRNA:   3'- ugCUGCUCuCGa-GGCAGCGGG---------UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 185351 0.67 0.884289
Target:  5'- uCGACGAccaucGCUUCGUCGCCgACGa- -3'
miRNA:   3'- uGCUGCUcu---CGAGGCAGCGGgUGUag -5'
16148 3' -57.4 NC_004065.1 + 19778 0.67 0.897237
Target:  5'- uCGAUGGGcAGUUCgaGUCGUCCGCgGUCg -3'
miRNA:   3'- uGCUGCUC-UCGAGg-CAGCGGGUG-UAG- -5'
16148 3' -57.4 NC_004065.1 + 35607 0.67 0.897237
Target:  5'- cCGGgGAGAaCUCCGUCuggaacGCCCGCcgCu -3'
miRNA:   3'- uGCUgCUCUcGAGGCAG------CGGGUGuaG- -5'
16148 3' -57.4 NC_004065.1 + 162222 0.67 0.870512
Target:  5'- aACGaACG-GAGCUCCGUaCGCCguauacuuaCACGUg -3'
miRNA:   3'- -UGC-UGCuCUCGAGGCA-GCGG---------GUGUAg -5'
16148 3' -57.4 NC_004065.1 + 110414 0.67 0.870512
Target:  5'- gACGGCGucucCUCCGcCGCCgGCGUCc -3'
miRNA:   3'- -UGCUGCucucGAGGCaGCGGgUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 68701 0.67 0.877502
Target:  5'- gAUGACG-GAGCUgCUGUCGacgaaccacaaCCGCAUCc -3'
miRNA:   3'- -UGCUGCuCUCGA-GGCAGCg----------GGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 86011 0.67 0.883619
Target:  5'- uGCGACGGacaggacGAGCUCuCGaaugugCGCCCAgacCAUCu -3'
miRNA:   3'- -UGCUGCU-------CUCGAG-GCa-----GCGGGU---GUAG- -5'
16148 3' -57.4 NC_004065.1 + 114666 0.67 0.884289
Target:  5'- gGCGGgGAGAccGCUaucgggCCGaUCGCCCGCcUCa -3'
miRNA:   3'- -UGCUgCUCU--CGA------GGC-AGCGGGUGuAG- -5'
16148 3' -57.4 NC_004065.1 + 6251 0.67 0.890868
Target:  5'- uACGGCaAGcAGCUCgCGgcCGUCCGCAUCc -3'
miRNA:   3'- -UGCUGcUC-UCGAG-GCa-GCGGGUGUAG- -5'
16148 3' -57.4 NC_004065.1 + 143452 0.67 0.890868
Target:  5'- uGCGACGAGGugccGCUCUGcgucgucgugaCGCCCguGCGUCu -3'
miRNA:   3'- -UGCUGCUCU----CGAGGCa----------GCGGG--UGUAG- -5'
16148 3' -57.4 NC_004065.1 + 168941 0.67 0.890868
Target:  5'- cGCGACGcAGAGCagCG-CGCCgACAc- -3'
miRNA:   3'- -UGCUGC-UCUCGagGCaGCGGgUGUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.